Protein Info for mRNA_5756 in Rhodosporidium toruloides IFO0880

Name: 14124
Annotation: HMMPfam-Myb-like DNA-binding domain-PF00249,ProSiteProfiles-Myb-like domain profile.-PS50090,ProSiteProfiles-Myb-type HTH DNA-binding domain profile.-PS51294,SMART-SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains-SM00717,SUPERFAMILY--SSF46689

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 362 PF00249: Myb_DNA-binding" amino acids 176 to 221 (46 residues), 29.6 bits, see alignment 6.4e-11

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

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Find the best match in UniProt

Protein Sequence (362 amino acids)

>mRNA_5756 HMMPfam-Myb-like DNA-binding domain-PF00249,ProSiteProfiles-Myb-like domain profile.-PS50090,ProSiteProfiles-Myb-type HTH DNA-binding domain profile.-PS51294,SMART-SANT  SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains-SM00717,SUPERFAMILY--SSF46689 (Rhodosporidium toruloides IFO0880)
MTSTSYQDLDVQVLTPPATPAVLDVPGPTFEGTPQSACDELSGGIEAEGDIVVDWETLLG
GCTGETGAAELDAAELERLLNAAGSWNELASSEQAGAILPDPPTPFFAFDSPSILSDFSA
TSATLSADSPFASSSLPTPATTIEFPPTPALTPSTDFSPTPSTSTSTDHPVRRVRVYWTA
QEDDLLMSAKEAPVNRKLSWVAIARKAGLGRTGKECRARYLILKDKRDLRRAEHEASPPD
AAAFRPAPRQRYLYSAADDAHLLSLILSSTRVDWSAVGKSLNPPRTGDNCYQRASKLRRM
RAAEDKAREAKERREVTEAVEAEQAGKAGLLGTVEEAEKLGAAENTLEELGLAWLANLAA
ET