Protein Info for mRNA_5760 in Rhodosporidium toruloides IFO0880

Name: 14128
Annotation: K14015 NPLOC4, NPL4 nuclear protein localization protein 4 homolog

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 745 PF05020: zf-NPL4" amino acids 149 to 293 (145 residues), 217 bits, see alignment E=1.2e-68 PF05021: NPL4" amino acids 296 to 651 (356 residues), 366.1 bits, see alignment E=1.7e-113

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (745 amino acids)

>mRNA_5760 K14015 NPLOC4, NPL4 nuclear protein localization protein 4 homolog (Rhodosporidium toruloides IFO0880)
MLVRIRAPNGNHRFTLEPSDDISVLVQKILETSNEIDPDTLALSNQPRGGENPVSGITGD
LASLGISHGDLLFASYKTRTAPSALSSHPASGTATPTTSSSSHAATLAGKPVPLDSLPIA
STSSSTSTSLANGSNDKQTAVRRPWEEAKEDEVDRYWEQKDGKIARPKGQHGCRCGPKSM
CDHCMPLEPFDAEYHASHNIKHLSYHAYLKKLHASIPSSAQSSTYIPPLSEESYRVAVPC
SSGSHPPWPAGICTKCQPSAITLTRQQYRMVDHVEFANPALIDGLLGFWRQTGTQRFGYL
LGTYAPYEEVPMGVKAVVEAIHEPPQEPHADGITVGFPWEEEAKVQALADACGLQIVGVI
FTDLTPDTSSDDAKKAGKVVAKRHANSFFLSSLEVLFSASLQRKHPTASRFSMTGRFSSR
FVTCVLSGDIEGQIAVEAYQVSDQAMAMVDADMVEASVDPGIVRVKEEGPTRYIPDVFYR
YKNKYGLEVKESAKPCFPVEYLLVNVTHGFPVSPNPLFTSPTPFTHENRAGLQDQTLSSV
ASSLVALAKDIPAELLSGTVGTNADPGEREKELEVLSADEGVGKVARWLSDWHLLRFLTD
CGMFEDNDLRLMCRIATIRPTDRSIASQRERATVLAQLFASPGWQTFMVVAQEQAPAPPP
RTYPGGSDSSAQQHPTQTLDGFDIPPDIDMPPEASGSGSGAAADLGAAAGAGAGVGGAKV
CPHCTFENPPDAGADCEVCGLPLSG