Protein Info for mRNA_5779 in Rhodosporidium toruloides IFO0880

Name: 14147
Annotation: K14848 RRB1, GRWD1 ribosome assembly protein RRB1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 508 PF12265: CAF1C_H4-bd" amino acids 93 to 157 (65 residues), 39.2 bits, see alignment E=6.7e-14 PF00400: WD40" amino acids 310 to 344 (35 residues), 25.9 bits, see alignment 1.4e-09 amino acids 359 to 390 (32 residues), 13.8 bits, see alignment (E = 9.5e-06) amino acids 404 to 441 (38 residues), 15.5 bits, see alignment 2.8e-06

Best Hits

KEGG orthology group: K14848, ribosome assembly protein RRB1 (inferred from 58% identity to lbc:LACBIDRAFT_243182)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (508 amino acids)

>mRNA_5779 K14848 RRB1, GRWD1 ribosome assembly protein RRB1 (Rhodosporidium toruloides IFO0880)
MGKRASSPVGERPAAKSAVAPAQTERAAAEQDGMGEFEDQWEDEFEDDEEAGEVVDAAEN
EDGEDGEMEVDEQEQRPASPKPYLPGTKLEEGEFLAPDLSTYPLLHSFVPTWPSLSFDIL
RDNDGEERRGYPVSCALVAGTQAGDPTANEVTVMRWEGLGKTRRDPEESDGEDSDDDDTE
DDPVLTFRAIPHKGGVNRIRARPLGNPLSQGPPLPPDPYHVATFSETGKVHIFDIAPHLN
SLLSPATASASLSKTPLHTVDNHGRAEGFALDWSKPSGSSTSHRLLSGDIYSKIYLTTLS
PSSITTSPKPFSSHTDSVEDIQWSPQEATVFASCSADRSIRVWDIRMKERKSAIGVAGAH
SSDVNVISWNLSTQYLLASGGDEGGIKVWDLRNFKGTSAPAPTPVVHFSWHTAPITSIEW
HPTDESCLAAAGADDQVTLWDLSVEEDEDERPTGPDADRLRDVPAQLLFCHQGQSDVKEV
HWHPQIPGTVVSTAADGFNIFKSLPFSS