Protein Info for mRNA_5781 in Rhodosporidium toruloides IFO0880

Name: 14149
Annotation: HMMPfam-Protein of unknown function (DUF3533)-PF12051

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 423 transmembrane" amino acids 217 to 240 (24 residues), see Phobius details amino acids 257 to 281 (25 residues), see Phobius details amino acids 293 to 316 (24 residues), see Phobius details amino acids 323 to 343 (21 residues), see Phobius details amino acids 379 to 400 (22 residues), see Phobius details PF12051: DUF3533" amino acids 2 to 388 (387 residues), 240.7 bits, see alignment E=1.3e-75

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (423 amino acids)

>mRNA_5781 HMMPfam-Protein of unknown function (DUF3533)-PF12051 (Rhodosporidium toruloides IFO0880)
MWACLPIYWGSYFRQPENLYRLTVGLIDLDSPGAQAAGRTPFAGPALLAAPAQLAGTNHL
GFRTLDNTRFDISSANGGAPRGVDVHKWAADAVQKEDYFGVIIANANATVAAVAAYEALS
SGTQATYEGMGAYTMYYSEGRNFETVDQWVAPGMNRFLDQYVLGSAASSLFAQLAPRLAS
LSATQYGAVNQTALSAVLAQPFGFSTYNLRPVDEFAGIPATTVGMLYLLIFTYFVSLFWN
IARGGVESKIPLGELILLRLAVPILQYIPISLFISLVTMAFKVSFHRFYGAGGFPLFWLS
NFLCMTGAGMPMEIALTFLGPRYTAFFLIFWVIINVSVAFLDLADMDHFYSYGFVLPIYQ
AVQNGKTIIFGTKARFGQYFGIEVAWALGGMAGLVLVIIFKRRQAVKQAGKKRAEEEKSG
KEQ