Protein Info for mRNA_5793 in Rhodosporidium toruloides IFO0880

Name: 14161
Annotation: K10581 UBE2O ubiquitin-conjugating enzyme E2 O

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1012 PF00179: UQ_con" amino acids 741 to 889 (149 residues), 68.6 bits, see alignment E=2.4e-23

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1012 amino acids)

>mRNA_5793 K10581 UBE2O ubiquitin-conjugating enzyme E2 O (Rhodosporidium toruloides IFO0880)
MTDSPAVQTPGSKVYTGPNGEELMPKMSDTYNEDIVQWTDADGTVKTAVVTRCWADEQNP
ETASEAQRLNIPFDPLKPGYLEVLHPDGSRTEILESTVKVVDRGLLFGDVVRPRRPHGTP
ATTRPKGPLGQIADMKTEVQLQRILTGEFLEGWFDTDELVAAARMNRGDHVVNGDWIGVV
EEVFEMAHIEAGNAGLVRRVCDIAGSLSVGPAAESVKQMLLDRGEGFLASLLGASDLKTI
LDVKQCMVAVNWLCRNPQAASTGTDNEWQRPKRYWTDIDQLIQVHATADHLHTVHDKVVF
KDPSRFPCPSSRWSSTYPEGHRVFVITNARTTATVVWQDGSRTTHSTAELEQVAQLDEDA
DIFPGDIGVFSGAEPNKVGVVQAVDARKRTIRLRWLDLNDPKHKPVEGEEGEETVSGLEF
DPHGPPPDAYGVRKGDLVLIQKEGETNGAVFPTVPGLGESEVAAGLMPGGEDLRMEISTL
GLSYAQTLSDSFIPPKPQTAPDSLTWYGEVRDLGLDGRVLVRHPSGTSATYETDRLTQLV
DGMDPAGEAAAGLQALVDEEGMMLDEDGEDEEEGVETDGSWMTEDEEMGSDEEEAGEPGV
VSCTIDDFAGDWSSQDDSQDEDYKADEDEEASAAGKKGSDVEMKGWADEEDETANKVASD
AEVEMNLLPPKASTSTAANDAATGSDATATPAAPAAATVSMPGEIEDFDDWKRFEVLEEA
PADHHYINEKIDAPGKAFMSRLRKEHQVLASSLPPNILVRAYENRTDLLRCLIIGPTDTP
FANAPFLFDVYLSPTKFPHEPPQVFFHSWASGVRVSPNLYVEGKVCLSLLGTWSGDKTEN
WSSARSSILQVFVSIQALIMVENPYYTEPGYEKQMGTTDGTAASELYNERTLVLTRAFVK
RACEYPPTNFSREIAAYYYNGLPGSEQAGGALQGIIEQSRLLLEESERWHAEQDKREEAG
DQAEDVRQPPKSGVVPSQRILTEGAGLSLRRTLKALEDLQKRGPKLDEPQAA