Protein Info for mRNA_5799 in Rhodosporidium toruloides IFO0880

Name: 14167
Annotation: K09540 SEC63, DNAJC23 translocation protein SEC63

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 667 transmembrane" amino acids 14 to 35 (22 residues), see Phobius details amino acids 68 to 87 (20 residues), see Phobius details amino acids 196 to 218 (23 residues), see Phobius details amino acids 334 to 356 (23 residues), see Phobius details PF00226: DnaJ" amino acids 100 to 167 (68 residues), 66.4 bits, see alignment E=2.1e-22 PF02889: Sec63" amino acids 230 to 591 (362 residues), 65.9 bits, see alignment E=3.3e-22

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (667 amino acids)

>mRNA_5799 K09540 SEC63, DNAJC23 translocation protein SEC63 (Rhodosporidium toruloides IFO0880)
MAGSYQYDTTGQSYFFLLTVLLLILLPFTYSTLFGGTERAASRVKAPCAGWNRKAAEVKR
VGSSKGAFTLRNALLAAGWLAFAVVVQRARSIEGEGVQFDPFAILGVSAGATEKQIKKHY
RKLSLKFHPDKMVLAVNQTKEEADSHFVELTKAYKALTDEVSRRNYELYGHPDGKQELSA
GIALPTWIVEGKNSPLVIGAYAILLGVVLPVLVGRWWYGTRKLTKDGVLNSTAAKYFHAL
KEETTFPQLLDILASSDEFATDPALLSLRKSLGKAAVDEYARLVSTVREGVDGKLGWEGY
ASWTPAKKRARVFIAAYMLRLPIKDAKLLKEKHLTASIALPLCSGLASIALAHNWLSTYI
AILHLQQFLLQAVHPSSSQLLQLPHLTPEIAAEAEKRGISTVAQFGQLKVDEVEKLLASK
PEAEKRDIYEVAKHWPVIEFVDAKFQVTGEKVVTPGAVVSFTLKLRLSPPGQAASKPKLA
VEKETSDVEEGEEQSVEELIGRRSAEADGVVPTPLAHAPHFPKDRKPSWYIFVGDHKLNR
VFVAPHRFTDIGEDVVRTVRMSFQAPPGPGLYTFQVYVTSDSFVGANAQKDMRMQVEPPQ
EEEEEDIEDDISEPDEDTIAGQMALLKGQSVKRNGGSDDEGDSEEDSDESDSETSSSSDS
DSDSDSD