Protein Info for mRNA_5805 in Rhodosporidium toruloides IFO0880

Name: 14173
Annotation: HMMPfam-Ion transport protein-PF00520,SUPERFAMILY--SSF81324

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 225 transmembrane" amino acids 44 to 65 (22 residues), see Phobius details amino acids 71 to 94 (24 residues), see Phobius details amino acids 106 to 125 (20 residues), see Phobius details amino acids 137 to 155 (19 residues), see Phobius details PF00520: Ion_trans" amino acids 49 to 152 (104 residues), 25.2 bits, see alignment E=4.5e-10

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (225 amino acids)

>mRNA_5805 HMMPfam-Ion transport protein-PF00520,SUPERFAMILY--SSF81324 (Rhodosporidium toruloides IFO0880)
MASPISPSSTPPPGSFDQPLRSPHFITRTEALRGAANRVLFSQFYIGLYLLMALLSLTTV
VLSATSDCPTLAFYILEIIVNTSMIAEVVIRLIAFGKQFWQSYWNALDLVITCFCAITLV
VIFFSGCSAKGEEVFDTFLLVVRNLFQFGRLALVLRKSGKSVFARPAPIDLSAARAYSLD
LDLDDEEALSTERRAMGGDIEAQRKQARRTGDDQRQFLLDTDEED