Protein Info for mRNA_5806 in Rhodosporidium toruloides IFO0880

Name: 14174
Annotation: KOG4197 FOG PPR repeat

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1557 PF17177: PPR_long" amino acids 1289 to 1427 (139 residues), 39.2 bits, see alignment E=1.3e-13 PF13812: PPR_3" amino acids 1298 to 1356 (59 residues), 31.4 bits, see alignment (E = 4.1e-11) amino acids 1369 to 1429 (61 residues), 19.6 bits, see alignment (E = 1.9e-07) PF13041: PPR_2" amino acids 1310 to 1358 (49 residues), 38.3 bits, see alignment (E = 3.1e-13) TIGR00756: pentatricopeptide repeat domain" amino acids 1313 to 1345 (33 residues), 24.4 bits, see alignment (E = 1.1e-09) amino acids 1347 to 1380 (34 residues), 17.3 bits, see alignment (E = 1.9e-07) PF01535: PPR" amino acids 1313 to 1342 (30 residues), 18.8 bits, see alignment (E = 3.6e-07) amino acids 1347 to 1373 (27 residues), 16.5 bits, see alignment (E = 1.9e-06) amino acids 1501 to 1531 (31 residues), 9.4 bits, see alignment (E = 0.00038)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1557 amino acids)

>mRNA_5806 KOG4197 FOG PPR repeat (Rhodosporidium toruloides IFO0880)
MVVNLSYKLTHLAHSLRHGGHTLRNAFPSTANPGFDFTSNVFGTVSNAAGNVGGGAATTL
GVAAGALGAGAGAAAGASSGGATGGAGGASSKAGSWGANWGFQNGKPVNGQAAQADSQQL
NDDADDLRALASSPARRRALLRSRTAQPSGRIASSFRARHGSLSSGCAPHPDLLRAEEAG
LSGVRLSSVEMQRRYHSAFARGEKADEAVEREADEVDLDVSTNTDVLKSRRRASISNRPT
MTLASPFVITTTPFASPRRPSTPLSSAPRSIHTSAVAAETAPSTDATVDTDSAAPPPLAS
SEEAAPAPNAFSEPPPTGTVGRARSNSSPTSDRPPLSRTLSPDRAPSDGDSHWQPTFAPA
SPRFLARREARGLRRADRQKDANEPSEIAKDRDRNGWLVKRRHNEGLTAPGAEQALDLIL
AASKTGQATVFEHALEQYRADPEKWSSAGHKEAMDALLHLRRPNDPIDSIIRLYNDLFDH
EQLRPSRRAYEVVIEAFCVRDKEIVSQIEALEAKAARRTLMAEARGPWRVAEGAKDNEQD
RETLARLRDTNFYQHARVFFDKLGEPAKHLSLPAYEALIETAAARGDVETAVSLFGRVEQ
QKYQNPGWRSHSALIRLYAKQENGADLVKEIFESYLFNRSKGVIRSSGLESLRRTNSADS
LDAKVSGDEQVWNETIRSLVSLGDFAGAVAIVEKLIVALNSTEPAPQGYPDKIGAEAWGS
LAAGFAAQGEHDKAITWFNRLVSGEAQGMRDGKDKLPGFALLDGMRTNDVAFVNHVYRYM
LAQADKVPLSIAHLARVIDYNLAHAAEAEDPAARNALFDAVVEFRRGFEQAVLANHVEAS
GVVSFSDSTGLLGRMAATMGSFGRFDVATSTFVELANIVRRLMRDASDEDVADAQTEAGW
TRSRRTWALTVTDDASGALGFVPAGNNDSAVHGLMRLVAERPSLQQAVTVVGWTNKLRNV
VHLAPVANHVLAVAEAYSAARAGPERDAELSQLSGDNWYTVLEGMAYSAALLQRGVAVEF
SFAGFDPALDDFLATGSQLPLTPETAELRAIRDSLALIGVPEARIDEVVNALQQRTAKAT
QQQPSPAAADAAAAKVDIVEDEAGSVTSESLGTATSATHETASATDSVLTPPSTPPAYFA
EREIKPAPSSAPPANEPAVDLRLTQLLDAFIGGHNIDKAFAKAREAAQQGRYARPETYSR
LIELLGRNKRMDDARIAYLDGYAALKALDNDPTAQALAWVQLEDRMILALANAGELKDVG
HHRDRLIQAGVAPSADAYGAMIANMHETTDNASIALTLFEEAMGLGVRPSQYLFNTLLSK
LSKARRAKEVLDYFELMKEYGVRPSAITYGTVISACCKIGDDATATFLFNEMVAMPGFEP
RVPPYNCMIQFYTQTKPDRERALHYWERLRNDRVLPTAFTYKCLLDAYGSIAPPDLEQTQ
QVFAQLVRDRGVTVNGSHWASLITAYGISAKNLDRAQAIFDSISHHPSTRRNPNGRLPDA
VVYEALLNACIANDRHELVDQYLERMRTEGVRMTAYVANALIKVRPAVPTSASCSPC