Protein Info for mRNA_5813 in Rhodosporidium toruloides IFO0880

Name: 14181
Annotation: K15340 DCLRE1A, SNM1A, PSO2 DNA cross-link repair 1A protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 950 975 PF07522: DRMBL" amino acids 807 to 936 (130 residues), 98.8 bits, see alignment E=1.1e-32

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (975 amino acids)

>mRNA_5813 K15340 DCLRE1A, SNM1A, PSO2 DNA cross-link repair 1A protein (Rhodosporidium toruloides IFO0880)
MPATLDGFLRSTAPAKRGTKSVDGADSGSAKKKAKKAGSPSDGAGGTPKTSGKGKAKAAS
PASAKGKKGKAVKGKKGKAVKGKKRKKTFVEDNRNLGTVDLLDSTDDDEVEVVAESPSAA
KSGSNSVKRIVLEEEEWLADEADQPKKQDFATDAPVEQDDGPEGTANLLSAQSKLRDPAE
QDPFDGCTDDEGELTVLGPSKKGKERADAAEEDDLVVEGGLTCPGCEALLDSMPEGDRDS
HVNSCLDASVAQTSTSSAPSRGLLAPLSRLFTFSSSSSAPSASSSKPAPAPQPGPSKPMS
FLPNAFTALMRGHDEANQWKKAEEADKQKGRLPKGEERKVPFYKWIDGMEITVDAFKYGK
IDGCKAYFLSHAHSDHYQNLNSSWSHGEIYASQTTINLIKLKLKLKDEYLFPLPMDKTVK
VHGIDVTLIDANHCPGSVLFLFEGPHTDPKSPFSKTPNRIFRYLHCGDFRASPQHILHPS
MSYPTPATSRMMARASSSTSQPSSSQPPDPLPGRTLKRLDAIYLDTTYLSPSYCFPAQEL
VISACAELVRERIVGGDETALWRADGREAERKGMKGWLKGDGAGVKKEEEGLKEEEEMER
MMQLGEGEERESQTPMPGLADDEQLYGDVDEPMELERLPEETDDAVMEGGGDEEAWLAVH
ADETQDAEEQEGETQVGATEAGDDSRGWSLANVDDPACCDDGDDLGEFSAPQVQHSAGGP
VDVKAKGEVTEEQSEEKPAVDGAADIKAEEADEKPDVKPKKERLLVLVGTYSIGKERIVK
AIAQALSTKVFCDSYKRSLFLAQDDPDLHALLTEDPLEAQVHIGGLRDITREAMQEYLAK
FKAPRIEGGFTKMIGLRPTGWTYRSETKDKYPSIPKILQIEQQRKFSPAGLYPQRDSTPI
TMAFGVPYSEHSSFFELTCFCLSLDWTRVIPTVNVHTASSRNKMKGWIDRWGAEKKRRAD
AKLPKIVPFRNVHYW