Protein Info for mRNA_5814 in Rhodosporidium toruloides IFO0880

Name: 14182
Annotation: K06669 SMC3, CSPG6 structural maintenance of chromosome 3 (chondroitin sulfate proteoglycan 6)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1246 PF02463: SMC_N" amino acids 39 to 1224 (1186 residues), 213.8 bits, see alignment E=5.6e-67 PF13175: AAA_15" amino acids 39 to 391 (353 residues), 37.2 bits, see alignment E=7.5e-13 PF13476: AAA_23" amino acids 39 to 249 (211 residues), 51.2 bits, see alignment E=6.1e-17 PF06470: SMC_hinge" amino acids 558 to 669 (112 residues), 99.4 bits, see alignment E=4.4e-32 PF13304: AAA_21" amino acids 1054 to 1201 (148 residues), 28.5 bits, see alignment E=3.4e-10

Best Hits

KEGG orthology group: K06669, structural maintenance of chromosome 3 (chondroitin sulfate proteoglycan 6) (inferred from 48% identity to uma:UM04389.1)

Predicted SEED Role

"Chromosome partition protein smc" in subsystem Two cell division clusters relating to chromosome partitioning

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1246 amino acids)

>mRNA_5814 K06669 SMC3, CSPG6 structural maintenance of chromosome 3 (chondroitin sulfate proteoglycan 6) (Rhodosporidium toruloides IFO0880)
MHIKAKPEGIRTAHGARRVPGSTQELNGTDLDAAVTLAQIQGFKSYRDETVVDPFSSGVN
LLVGRNGSGKSNFFSAIRFVLSDAYTSLSREERQALLHEGGGGAGGATMSAFVEIEFDNS
DGRFPTNKPSLLLRRTIGLKKDEYQLDRKSTSKGEVMSLLESAGFSRSNPYYIVPQGRIT
HLTNQKDSDRLLLLKEVAGTKVYEDRRAESIKIMDETNAKRDKIKDLLEYIQERLGELEE
EKEELKQFQTHDRARRSLEYCIYQRELKDVGDALDQIEEERRRDVDNANSKREEFVAREK
ELSNIHSRLSALRETLSALATEHSDLSTERRDLTKLRTQVDCLVRDAEDASRSSAERKTE
LEDELERVEKECSEKENELEREARPEWETKRDEEEAGKEELEGLQVTLRGLYAKQARRGQ
FRSKQERDAHLDGLVKRNEEVLQTRKRRETALVHEREETEKELADVQGRRKEMRQEVDSR
KERTREVQDEIGRLKEQFVEKNEQRKDLWKSESKLDAQSRHAHEQLKGAERTISTTMDRD
TANGLRAARAIADELGLDGFYGPLYELFEVEERYKTAVEVSAGTSLFQIVVDNDDTATRI
LDRMVQDKSGRVTFMPLNRLRVHDVEYPKSNEAIPMINKLKFSEEFRPAFKQVFGRTIIC
QTLEIAGAYTRSHGLNAITLDGDKYDRKGSLTGGYHDVRRSRLDAVKQLKAAQKKDEELS
GQRNEIKTTLVRLEQEITQLVGKIKVAEGSLTRLRDEHAPFLEATMQAQAEEDRLKTKLA
KLDVQLAEHRSNMRGLEKECEMWRKEMESAFEGEEGLSAEEEDEMTRLSEEAEKRKKALV
ELSKEVSKLASRKDLLTIELNENLRRRREDIRARIDALDSTASGQDAQIGAGGAEELKGR
KNELKKLDKQIEALNSRLGEIDEETDKVNKEIADLEKEKEKRDTQQADDQRGIARQQKNV
ERYLAKRQVLLQRKDECNKNIRDLGVLPEEAFAETTASSEKLLKKLRKVNEALKGFAHVN
KKAYEQYTSFTKQRDELLARQKELDESQKSITELIDVLDARKDEAIERTFKQVAKNFAEV
FEKLVPSGRGRLIMLKRQQEKDDDEMDVDEPEEDGGVENYTGVAIRVSFKSKSNEGLRLQ
QLSGGQKALVALALIFSIQKCDPAPFYLFDEIDANLDADRRTAVAAMIGELAQEAQYICT
TFRAELIQHADAYFGVVFNQAKISNVKTLTADECSTFIEAAEQVRA