Protein Info for mRNA_5816 in Rhodosporidium toruloides IFO0880

Name: 14184
Annotation: KOG1437 Fasciclin and related adhesion glycoproteins

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1059 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details transmembrane" amino acids 661 to 681 (21 residues), see Phobius details amino acids 984 to 1007 (24 residues), see Phobius details amino acids 1018 to 1042 (25 residues), see Phobius details PF02469: Fasciclin" amino acids 269 to 403 (135 residues), 42.1 bits, see alignment E=5.1e-15 amino acids 637 to 773 (137 residues), 60.4 bits, see alignment E=1.1e-20 amino acids 793 to 886 (94 residues), 23.5 bits, see alignment E=2.7e-09

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1059 amino acids)

>mRNA_5816 KOG1437 Fasciclin and related adhesion glycoproteins (Rhodosporidium toruloides IFO0880)
MRLLGVLLWLPALAATAASAKPHPAPPDTSHLVDILSASPDHQLLLAAFQRARLIPTLNR
LNGSTLFAPTDEAIRRERDREKERALSGVVGAAVWTPLVEWVDEGKAEGQEHDNLQLALR
DTLLYHVLNFTLLAAPPSNDTNSTRPEPPKPLPFDVPVLEETLYFPSLFPYNRSFPAPPT
LPGTEPDRPDPDAPKGRPESLLHDEGQRLRLLQKKGEKDELWVGVDWKGEGGIKTTGDNQ
FARNGVFIPVEEVLHKPEDLATLIRTTPELSTFASLLPSSVLDYISTAPHLTLFLPTNDA
WSALTELEMRYLRSGFADNDLSEIFGDAASQSGAGKGKVGYLERLVGEKADGKTQLETIR
NGTLEVQGEGDATKATVNGTAIERGDILAKNGVIHMVPSLLLPSGSLMLTAEKYLIALDA
THFVALLRSVNLSHYVQVPSNEPGTVIDTPPPPPLAANLPQTPLSVADEPSKPKKERYTI
LAVKDDVLAHAAAGLSAVSSLDSPVLNGRPLPPSGSEALKELLEYHIVSGQWRPSELEDG
MLVGTELRTESLGGGRQRIMVGVQGEEGSRGEGWERSSKGKKGRGGDDSDEKELISWGGA
NVVADPVVIGNSIIYLVSALLEPPPTAITAAVSDLRLSTFVASVYAAALDGTLATQPAVT
YLVPTNAAFGALGLTMQYLLLPTSRFELRSVLEYHAVDEVVYLADFPESGGSRYPTLLDG
SEIYFERDAVNSTLSVHGPTLGGLPANGEPRDAAVIEGNVLTETGVMHVIDQVELPPELE
ITLEKLLRGAKANTMIDLIRAANMTWVLDGKKPPRKRQDGEEEETRPLMTTRKKKTRHDD
SDQAYTILCPTDKAFGRLNLTYYLSNPTALSRLVRLHVIPTSSSSSTGSPFPPRSSNPGS
PLILEDAKTYDSLLSKSQPGGSSKFGALAFKKWGGGEDDWMVGIRGARGTKGESDAARVL
AWGRATPWFVTSDKGDEEDGDEFAAALGSTVRLAAAGGVISIDSVLIPYEPGWFRKWGWV
VTLAVVLLSIVAVGAVFAVRWWRKRQQLKYERLMQEEDD