Protein Info for mRNA_5829 in Rhodosporidium toruloides IFO0880
Name: 14197
Annotation: K00228 CPOX, hemF coproporphyrinogen III oxidase
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Predicted SEED Role
"Coproporphyrinogen III oxidase, aerobic (EC 1.3.3.3)" in subsystem Experimental tye or Heme and Siroheme Biosynthesis (EC 1.3.3.3)
MetaCyc Pathways
- superpathway of heme b biosynthesis from glycine (7/8 steps found)
- heme b biosynthesis I (aerobic) (4/4 steps found)
- heme b biosynthesis V (aerobic) (3/4 steps found)
- superpathway of heme b biosynthesis from glutamate (7/10 steps found)
- superpathway of heme b biosynthesis from uroporphyrinogen-III (3/6 steps found)
- 3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent) (3/9 steps found)
- 3,8-divinyl-chlorophyllide a biosynthesis III (aerobic, light independent) (3/9 steps found)
KEGG Metabolic Maps
Isozymes
No predicted isozymesUse Curated BLAST to search for 1.3.3.3
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (471 amino acids)
>mRNA_5829 K00228 CPOX, hemF coproporphyrinogen III oxidase (Rhodosporidium toruloides IFO0880) MRPRDAVDAALRQPASAFVRRLCPARLCVLPLFAMLRNSSTAHGALRRASLSSAPTARLH SFPSSSASLPIIPPPRSSRAHSSFTSWNPHTTHSHRSRFLMTVSVAAGLAAATAAFSLYK SPLDPLDCEEQRPMSAQRGRPSFVPTPSVDLDDTSIPMRLRMIHHIKSLQSTICEALESL EPSGQKFKSSYYLRDASKGFGDSRVLQDGETFEKAGCNISVIKSTLSVPAVRQMRAERFD WWDGVSELPYFVAGCSLVVHPRNPHAPTIHFNYRYFEIQDPKDPNGEPKAWWFGGGTDLT PSYLYEDDARHFHGLYKEACDRHAAGYYARFKKWCDEYFYIPHRQESRGIGGIFFDDLSE GDPEAIFKFVRDCSNSYLPAYYPIVERRKDQPFTEEEKRWQQLRRGRYVEFNLVYDRGTK FGLAMKEPRTESILMSLPLTSRWEYEPEVGTIEGSREKKILDILKKPVEWA