Protein Info for mRNA_5842 in Rhodosporidium toruloides IFO0880

Name: 14210
Annotation: K04508 TBL1 transducin (beta)-like 1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 917 PF00400: WD40" amino acids 594 to 620 (27 residues), 22.3 bits, see alignment (E = 2.8e-08) amino acids 629 to 662 (34 residues), 20.6 bits, see alignment (E = 9.9e-08) amino acids 669 to 701 (33 residues), 17.5 bits, see alignment (E = 9.6e-07) amino acids 709 to 745 (37 residues), 39.1 bits, see alignment (E = 1.4e-13) amino acids 784 to 825 (42 residues), 19.5 bits, see alignment 2.1e-07 PF12894: ANAPC4_WD40" amino acids 632 to 686 (55 residues), 21.5 bits, see alignment 3.5e-08

Best Hits

Predicted SEED Role

"High-affnity carbon uptake protein Hat/HatR" in subsystem CO2 uptake, carboxysome or Carboxysome

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (917 amino acids)

>mRNA_5842 K04508 TBL1 transducin (beta)-like 1 (Rhodosporidium toruloides IFO0880)
MRRVSPIQPATRWSDLGWSTCCDKGNGCPGAVKACGRACWIQRSVAGEGRRPRVLPDGDP
TCAGLHGLSRLARSCAGVYHESLPYSRIVTDWTHTHAYAGYHHTSFSLLHESSLAGPSSS
SNHSSTNVSPQPNGRSSAEPSRNPVMDQVVPPGHLVRLLQKGLLYLEAEARYRGDAPDPP
PRIIGYSIPNSLPLPPLPKYVPPPPAPSAPAPKSASATPPVSGTSAAAIFESAPASKDKG
KGKAKEVDGAPPAASGSVAPKKKKAAVAEEDVDGGEAAMKKARAASAVEGTAAGKKGKGK
AVERDTKARKAPDDEDVDMEDASTTNEHEVEKPKKDTGKEREDAPPAVSTGAKREREKDD
LRPPPAKKSASSVPPTSTSSAAASQPKRSASPVVSRKSKPAQNDAAQSASPSAPGPAPSK
FRITMTTKTVSTSVPLQSPSAGPVVSAAQAAADKRRRGSGDSNQSKEGGGERLMKVKTET
AESGLSSSSGSTLKKNGVTAPKSPLKTPATLKEIDMRGVKVIGSEDGRVVKLMGHTVAKI
QPCSFNSKVPSLATGAADSTCRIWDVPSPPSSSAAQTIVSDPIVCKHASAQRRCDITCVA
WNPSGSLLATASEDGVGRIWTPSGDLYLVLSMHQRSICSLKWNPSGTGLLTSSLDQTVCL
WDPSNGKVRQQYSTHSDAVLDVDWNDDTTWVSASMDKQVHLMSTTRPTPLHRFKGHRDEV
NGVKFSPCGTLIASCSDDTTIRVWSLRNIPAVARDIAARKVKQGDEERMIDMDEEDGGGG
GCFVLEGHESDVHQIAWHPEAGKEGSDGPRLLASCSFDQTARLWDADTGTCLYTFARATD
FVYSVAFEPTKGRYLATGSNDNKLDVWRVKDRALVSEYTHPSSIYEIAWHPHGQQIAVCG
GTLEVAVVSVEEGQVSK