Protein Info for mRNA_5846 in Rhodosporidium toruloides IFO0880

Name: 14214
Annotation: K04508 TBL1 transducin (beta)-like 1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 772 PF00400: WD40" amino acids 386 to 420 (35 residues), 14.5 bits, see alignment (E = 8.3e-06) amino acids 449 to 475 (27 residues), 22.6 bits, see alignment (E = 2.3e-08) amino acids 484 to 517 (34 residues), 20.9 bits, see alignment (E = 8.1e-08) amino acids 524 to 556 (33 residues), 17.7 bits, see alignment (E = 7.8e-07) amino acids 564 to 600 (37 residues), 39.3 bits, see alignment 1.2e-13 amino acids 639 to 680 (42 residues), 20.8 bits, see alignment 8.2e-08 PF12894: ANAPC4_WD40" amino acids 487 to 541 (55 residues), 21.8 bits, see alignment 2.9e-08

Best Hits

Predicted SEED Role

"High-affnity carbon uptake protein Hat/HatR" in subsystem CO2 uptake, carboxysome or Carboxysome

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (772 amino acids)

>mRNA_5846 K04508 TBL1 transducin (beta)-like 1 (Rhodosporidium toruloides IFO0880)
MDQVVPPGHLVRLLQKGLLYLEAEARYRGDAPDPPPRIIGYSIPNSLPLPPLPKYVPPPP
APSAPAPKSASATPPVSGTSAAAIFEPAPASKDKGKGKAKEVDGAAPAASGSVAPKKKKA
AAMEEGANGGEAAAKKARAAPAAEGAAAGKKGKGKAVERDAKASGAVDVEDVDMEDASTT
KEREAEKPKKDKGKEREDASPAVSAGAKREREKDDLRPPPAKKSASSLPPTSTPSAAASQ
PKRSASPVVSRKPKLAQNDAAQSASPSAPSPAPSKFRITMTTKTVSTSVPLQSPSAGPVV
SAAQAAADKRRRGSGDSNQSKEGGGERLMKVKTETAESALSSSGSTLKKNGVSTPKSPLK
TPATLKEIDMRGVKVIGSEDGRVVKLKGHTVAKIQPCSFNSKVPSLLATGAADSTCRIWD
VPSSPSSPASQTTVSDPIVCKHASAQRRCDITCVAWNPSGSLLATASEDGVGRIWTPSGD
LYLVLSMHQRSICSLKWNPSGTGLLTSSLDQTVCLWDPSNGKVRQQYSTHSDAVLDVDWN
DDTTWVSASMDKQVHLMSTTRPTPLHRFKGHRDEVNGVKFSPCGTLVASCSDDTTIRVWS
LRNVPAVARDIAARKVKQGDQERMIDMDEEDGGGGGCFVLEGHESDVHQIAWHPEAGKEG
NDGPRLLASCSFDHTARLWDADTGTCLYTFARATDFVYSVAFEPIKGRYLATGSNDNKLD
VWRVKDRALVSEYTHPSSIYEIAWHPHGQQIAVCGGALEVAVVSVEEGQVSK