Protein Info for mRNA_5850 in Rhodosporidium toruloides IFO0880
Name: 14218
Annotation: HMMPfam-2OG-Fe(II) oxygenase superfamily-PF03171,HMMPfam-non-haem dioxygenase in morphine synthesis N-terminal-PF14226,ProSiteProfiles-Fe(2+) 2-oxoglutarate dioxygenase domain profile.-PS51471,SUPERFAMILY--SSF51197
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
KEGG orthology group: None (inferred from 45% identity to ncr:NCU06416)Predicted SEED Role
"2-Oxobutyrate oxidase, putative" in subsystem Methionine Degradation
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (331 amino acids)
>mRNA_5850 HMMPfam-2OG-Fe(II) oxygenase superfamily-PF03171,HMMPfam-non-haem dioxygenase in morphine synthesis N-terminal-PF14226,ProSiteProfiles-Fe(2+) 2-oxoglutarate dioxygenase domain profile.-PS51471,SUPERFAMILY--SSF51197 (Rhodosporidium toruloides IFO0880) MAVSGIVPIIDFAPFLTGSQAEKEEVAQELFKACTDVGFLMLRNIDSLVPPSQIASAFAL TKQFFDLPMQVKEKLAWECPESNRGYVAEGRERVTQESSKEAIEQLRVQAPDYKETLEIG KDYKEGPYDSPFENRWPEADLPDFKPFMNQFFEDCHKLHVEIMRALALAMGLGEGFFDDK VDQKAHNLRLLNYPSIEKAKIEGGGNRAGSHSDYGTVTLLFQDSVGGLEVQDKQGNFVPA RPVPDTVVVNVGDLLMRWSNDVLKSTIHRVVLPADGDPSEPMTARRNSIAFFSNPNLHEM IRCLPGTGEPKYPEVETEAYLVKRLSETYTK