Protein Info for mRNA_5854 in Rhodosporidium toruloides IFO0880

Name: 14222
Annotation: K12826 SF3A2, SAP62 splicing factor 3A subunit 2

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 220 PF12874: zf-met" amino acids 55 to 78 (24 residues), 27.8 bits, see alignment (E = 2.6e-10) PF16835: SF3A2" amino acids 117 to 211 (95 residues), 134.3 bits, see alignment E=1.6e-43

Best Hits

KEGG orthology group: K12826, splicing factor 3A subunit 2 (inferred from 68% identity to cci:CC1G_01767)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (220 amino acids)

>mRNA_5854 K12826 SF3A2, SAP62 splicing factor 3A subunit 2 (Rhodosporidium toruloides IFO0880)
MDYQNRVGSKFGGGGVARADETAIDRRERLRKLALETIDLAKDPYILRNHLGGIECRLCL
TLHTNEGSYLAHTQGKKHQTNLARRAARDAHDPNYAAQLAAQAAQKPKVQTKTFIKIGSP
GYQVTKVRDPVTGQLGLLFQVHYPEIKEGIKPRHRFMSAFEQKQEVPDRNWQYLLIAAEP
YQTISFKIQAREIDSTEGMSWEHWDQDTKTFSLQFLFAQK