Protein Info for mRNA_5857 in Rhodosporidium toruloides IFO0880

Name: 14225
Annotation: K01875 SARS, serS seryl-tRNA synthetase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 512 PF02403: Seryl_tRNA_N" amino acids 40 to 141 (102 residues), 41.5 bits, see alignment E=1.4e-14 PF00587: tRNA-synt_2b" amino acids 268 to 419 (152 residues), 70 bits, see alignment E=2.6e-23

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (512 amino acids)

>mRNA_5857 K01875 SARS, serS seryl-tRNA synthetase (Rhodosporidium toruloides IFO0880)
MLPRSLRAGSRRFPLASRPTPTLRTASTSSAHASSLPAPVIDLSAVLDSPEIVKRNLLER
KFPLNPSKIDELRTLASQLAETKKEVERLRAQRNALAAQSKGDPEAREKGKEVKRELQAV
EPRVAELALEIQEIALQLPNTSHPEVPVGAEDQARIVKTLGPDLGASEPRAEPERDHLTL
SSPSNLAWTDFAASAFTTGSSWPLLTNEAALLELALTNYAMSIALSHGFTPVLTPDVVRS
EVSARCGFRPRDDEAQQTYFLSDGIETSALCLAGTAEIPLVGMSGSQTFLEQDLPRKHVA
IGRAFRAEAGARGADSRGLYRVHQFSKVEMVVVCAEEESDALLEELRGVQEEILGGLELS
LRVLDMPTQELGASAHRKYDIEAWMPGRGKWGELSSASNCTDYQSRRLGIRYRPASRKHS
HPDSPSSSSSSSAHSTSSSGRKLAYAHTLNGTAAAIPRLIVALLENGAVFEADGKKVARV
RLPAVLRPFWLGKGTDERIEWVPEGEALRVQQ