Protein Info for mRNA_5861 in Rhodosporidium toruloides IFO0880

Name: 14229
Annotation: K16261 YAT yeast amino acid transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 599 transmembrane" amino acids 93 to 114 (22 residues), see Phobius details amino acids 120 to 140 (21 residues), see Phobius details amino acids 144 to 149 (6 residues), see Phobius details amino acids 152 to 192 (41 residues), see Phobius details amino acids 203 to 225 (23 residues), see Phobius details amino acids 235 to 257 (23 residues), see Phobius details amino acids 277 to 300 (24 residues), see Phobius details amino acids 319 to 340 (22 residues), see Phobius details amino acids 372 to 393 (22 residues), see Phobius details amino acids 419 to 438 (20 residues), see Phobius details amino acids 445 to 467 (23 residues), see Phobius details amino acids 490 to 511 (22 residues), see Phobius details amino acids 531 to 549 (19 residues), see Phobius details PF00324: AA_permease" amino acids 92 to 554 (463 residues), 461.1 bits, see alignment E=4.1e-142 PF13520: AA_permease_2" amino acids 95 to 520 (426 residues), 109.2 bits, see alignment E=2.4e-35

Best Hits

Swiss-Prot: 46% identical to CAT1_SCHPO: Cationic amino acid transporter 1 (cat1) from Schizosaccharomyces pombe (strain 972 / ATCC 24843)

KEGG orthology group: None (inferred from 69% identity to lbc:LACBIDRAFT_296817)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (599 amino acids)

>mRNA_5861 K16261 YAT yeast amino acid transporter (Rhodosporidium toruloides IFO0880)
MALHDLEKSSSSSKDEGGFVTTQTATDVERAGVTPEFYDPSKESLATRLGVNWESFKRAP
GATGGHHIHGENVDPLKANENPMLQQKMKPRHLQMIAVGGSIGTGLFIGSGQALRNGGPL
GILLAWCIIGVMLINVTQALGEMCILYPVSGSFYSLAVRFLDPGFGMALGWNYFAQWAVV
LPLEITAAGITVQYWPAAANVPIAAWITVFWIAIIIVNIFGTLGYAEEEFWSSCLKLAVV
VIFIVIGIVLNCGGGSGPYSDYVGGQYWREPGALANGFKGICAVFVTAAFSFAGTELVGL
AATETPNPRKTLPTAVKGTFWRITLIYVSSLLIIGLNLPYNDERLLGGGSGAGTSPFVIM
ATRAGLNGLDHLINITICISVLSIGLSCVYAGSRVLTALAETGYAPKVFAYVDKSGRPLF
SVIAVLLFGPIAYVNVVAAGDTVFNWLLALSGLSTLFTWGSICLCHIRFRAAWKYNGHSV
DELPFKAMGGVWGSWLGLSLVVLVLIAQFYIAIWPLGGRADSAQQAAQDFFLVWLAAPIL
LFFWLCAYIKNRTLPRKVHEIDVDTGRKTWFTAEEMNAYRAERKAAPFYIRIYRILFTN