Protein Info for mRNA_5865 in Rhodosporidium toruloides IFO0880

Name: 14233
Annotation: KOG0800 FOG Predicted E3 ubiquitin ligase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 447 transmembrane" amino acids 81 to 102 (22 residues), see Phobius details amino acids 113 to 134 (22 residues), see Phobius details amino acids 168 to 189 (22 residues), see Phobius details amino acids 208 to 236 (29 residues), see Phobius details PF13639: zf-RING_2" amino acids 348 to 405 (58 residues), 33.8 bits, see alignment 5.2e-12 PF13445: zf-RING_UBOX" amino acids 349 to 402 (54 residues), 26.3 bits, see alignment 9.5e-10 PF00097: zf-C3HC4" amino acids 349 to 404 (56 residues), 27 bits, see alignment 5e-10

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (447 amino acids)

>mRNA_5865 KOG0800 FOG Predicted E3 ubiquitin ligase (Rhodosporidium toruloides IFO0880)
MSSETAPLPPEPSHTAPEASSASHTFPPHPHQGSDVPPTPPNDAPQVTVVDLTPAMQMRL
SLLRRLRLASVEMQGVRRRRLLFFGIVGLAQLVAWIVILAMHYHDPCDKPLAPYLVMVTV
RIFVAFPLSFYNAVTPRLPTRRDNDTTRAVLEANRRIGSPTLDRRVRWAGDLVSILGLVL
LVAGSFWLGSSKTCQMTAPALYKSAVAALILSWLWMAELAIYVVLAILFLPFLLVGMRWF
GLGQAKNEIGPLGKADIEKLPQRIFIGTKPEPSAEDGTTPSPSSHPQAPSSTPSPSRRPR
QKQWWRLWRSKNTSTSQKVAGGGDRLDGDHVPFPPGVEGILLPESQTACSICLCEYELPP
SRSAPEASEWKVEENLLRLLPCGHALHSECLGEWLGVSGRCPLCQRPVNEPKSTKGRKAA
RAASTGSGTRETPPTSGGGAGAGDEQV