Protein Info for mRNA_5867 in Rhodosporidium toruloides IFO0880

Name: 14235
Annotation: K02950 RP-S12, MRPS12, rpsL small subunit ribosomal protein S12

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 178 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details TIGR00981: ribosomal protein uS12" amino acids 56 to 178 (123 residues), 184.1 bits, see alignment E=3.9e-59 PF00164: Ribosom_S12_S23" amino acids 66 to 177 (112 residues), 120.2 bits, see alignment E=1.7e-39

Best Hits

KEGG orthology group: None (inferred from 57% identity to cim:CIMG_00717)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (178 amino acids)

>mRNA_5867 K02950 RP-S12, MRPS12, rpsL small subunit ribosomal protein S12 (Rhodosporidium toruloides IFO0880)
MFSLAASFARLTIAARPALARPSLRSAVAASSSSPLASTSRVQLQHAFSTSRPAQATLNQ
VTRGCRKPKKRGVKTPALQGCYQKKGVCSKVYTVKPKKPNSAVRKVAKVKLSTGRSIIAY
IPGEGHNLQEHSVVLIRGGRTQDLPGAKYKIVRGAQDLSGVVGRASSRSKYGVKKPKK