Protein Info for mRNA_5871 in Rhodosporidium toruloides IFO0880

Name: 14239
Annotation: HMMPfam-zinc finger of C3HC4-type, RING-PF15227,ProSitePatterns-Zinc finger RING-type signature.-PS00518,ProSiteProfiles-Zinc finger RING-type profile.-PS50089,SMART-Ring finger-SM00184,SUPERFAMILY--SSF57850

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 911 signal peptide" amino acids 1 to 32 (32 residues), see Phobius details PF00097: zf-C3HC4" amino acids 334 to 362 (29 residues), 22.7 bits, see alignment (E = 1.1e-08) PF13445: zf-RING_UBOX" amino acids 334 to 365 (32 residues), 32.8 bits, see alignment (E = 8.8e-12) PF15227: zf-C3HC4_4" amino acids 334 to 365 (32 residues), 34.6 bits, see alignment (E = 2.5e-12)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (911 amino acids)

>mRNA_5871 HMMPfam-zinc finger of C3HC4-type, RING-PF15227,ProSitePatterns-Zinc finger RING-type signature.-PS00518,ProSiteProfiles-Zinc finger RING-type profile.-PS50089,SMART-Ring finger-SM00184,SUPERFAMILY--SSF57850 (Rhodosporidium toruloides IFO0880)
MQRQPTAPYVAARLIRLLALLHPFISTGTSGRSAGRLAELLHNKEEPRCLLMTAANSLQS
RILELRSNCFPLVHLGMHRLETVGGGWASDSQRRTTTRSSPSPRTSPYPLPSPSSPRKRS
RSVDRNLKESLKDRKVTGGTATAARKTRKTAAAAITPASVSTGSNESSTQATRPVRSLPR
RANKISGADKSAIDESARRPTERKANVEKLASPPADSTARTSASRKRSAVALPDDTPSTT
TTPKSTKKTRKTREIDFDDDEPAVLPAGPSQSAKLVDSSKLSADARRKVKGKAKITVDEK
DAELVRLKQELKAKEELAEKQSQALAALRSSVACGLCNELLENPHSLKCGHIFCRSCLEI
AWTTEPDSNDDAHNSERSDSATDSEDDASGDESDASAAVYPPRRPGYIAFRPLGAWLDDD
EDDEDEDEEDDEEEDEYDTAPYSSGAFFGLTIGKKRIVEVDNLQDEDAERAFERASAAML
DDFVAYTAKRHQQRRLRRQALPRRRSKAGPSRVRSGRREPVPARDGLALALTRRRQGGAV
RRSPSPAPSADDVRKEICCPTCGESCADTRPTRVVLFNGILDTMRKAGVTASGVVGGDKG
KKKEKVSVAEEEDETWGGLFPVEEKKEDSPDQVVEVAEAVEEKEVVVEAVTKDDGHDTEN
LSTDESGSKDVSGEVEKPGKSGEGNASTVANVVEPATAIATVKDRDETSAALVASSSATP
LTAKATPTGLSTPSFFGITAFRSSSSSSASLSSDSSFATSAAAFGLPARSRSRSTSSSSA
SSSSSQDSTSASSVLEDPKQDPSSPAPARHIRGESERKNKDSGLRLETEVLTRSASPRLR
IARPQQGRKSGLGSDSTDLASGSSKNDDAEVETSQATTTVRKSRKRAREEEDGETATAKE
AVAKGKKTRRA