Protein Info for mRNA_5872 in Rhodosporidium toruloides IFO0880

Name: 14240
Annotation: HMMPfam-Pleckstrin homology domain-PF15404,SMART-Pleckstrin homology domain.-SM00233

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1308 transmembrane" amino acids 872 to 891 (20 residues), see Phobius details PF15404: PH_4" amino acids 1134 to 1244 (111 residues), 67.7 bits, see alignment E=5.9e-23

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1308 amino acids)

>mRNA_5872 HMMPfam-Pleckstrin homology domain-PF15404,SMART-Pleckstrin homology domain.-SM00233 (Rhodosporidium toruloides IFO0880)
MQLPRVLAGSSAAFDEARNRLPALPSRPNAALVLPPHLLDIISTEPLDSPNHSHGMNGPP
PGEASTSSSPTQSRFTRSSSTAAATPSAPPLVPLDKHLYTQPDYAVKTKDERIPHMETKH
AGLTALRRVFVGPSFTAGHGSGGSASTAPMGKGKARAPDHEEEVDVFASGAATPHHPGLS
FPMRRRRRASTAFSIATTKTGQTVTSSVQGSTGGGEYSRLHEWTGTSFEIGGDIRDAARR
RDARLARQREDGDEHAQRERKGSHSLLSARDRKDSLASGQFLEHLTATPPTSLPPRSPAA
TTVTGASFVTAQTHLPRRASAFEHRSPPPVGHERRFSQPMRRASRVSFSDGAATTDGVVN
GTPDKRTPLPPLRSILRAKSSFAHHDAFSDELEIIDEPRTPASERPAPLYASVRFPEKPV
AANVPSPSRSGAEPPAPPEIVLARPDTNTPRSSMATDRSAAALLGLPDGDAEPKQTHRPW
WKKRSADAVLRKERMLVRRDWTHREDLPDTYDEHVARKYPSVSETWQELAVVWRASGQIE
LWGEPSFKLPMFSGNKKLRGVIPLHPKKTHITLYSATDLVFCLTHRPTPHHVLSRQSARY
PHHHDDEEDPDEKGDGQHRKTRFTKASKRGYVHLGSTGTNIYLFRARTHSTAKAWIWHLY
RALGGQLPPAIEITVPGLGAKLRLPLPKGCDYEEDVDLGEHTDDDLEGNAYRHLQPTAVV
DACIEQLAGVREWKDLVEDAKRMGADFRLAWRNGAILDWIQPELVDQRKCDFSVVGGVAF
RQARFQPVLELRPAAHYPTTCRIPAHEGASGSHISSTVRISEPPGIEGFLVRHRPNGTPE
RVYLSSRMGLLFVCRPSAAHPPDPPMPVYEALNNPAAVVLAPFVFGMASLAQPNKKKREK
LWDRLAAGNVRSRAHKQQNKRDWTLRSMYAAADGKIGHDGDDGAASWDGSKMLEWLETEE
KKRAFLQITDARGFCSLSELASVEPELEDDPRQQFARVADLGGNEGLQAADDKAKLRKMR
SFVIKTQQGTTARFECHSIEVREEWVNRLRALATYWRRRERVDANQLMELSANSGLINPI
PARGAHRRHAYEDDPDDEGLPPPTRNEVLSSPHLTHLFNWCLLDGCRTLMQQRTMYVKQG
LRGVFRLRHVVLLHGVLIEYQSIVRDIKGQPLPTPYHRRRHIVHLRDCYVYSGALASHLL
PRLGNTMGWTPGDESEHQFPRCYPSSDGLRTADDREDCTFVIVKIKHSKSGKGDKLGMKG
VDARVYRTRSKLERDQFVYALNASIERLLRGEEVRENRLRDFAWLQHH