Protein Info for mRNA_5874 in Rhodosporidium toruloides IFO0880

Name: 14242
Annotation: K04536 GNB1 guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 372 PF00400: WD40" amino acids 54 to 90 (37 residues), 24 bits, see alignment 8e-09 amino acids 106 to 132 (27 residues), 15.9 bits, see alignment (E = 3e-06) amino acids 146 to 179 (34 residues), 17.6 bits, see alignment 9e-07 amino acids 188 to 221 (34 residues), 17 bits, see alignment 1.4e-06 amino acids 226 to 263 (38 residues), 33.1 bits, see alignment 1.1e-11 amino acids 274 to 307 (34 residues), 17.3 bits, see alignment 1.1e-06 amino acids 312 to 347 (36 residues), 15.8 bits, see alignment 3.3e-06

Best Hits

Swiss-Prot: 73% identical to GBB_DICDI: Guanine nucleotide-binding protein subunit beta (gpbA) from Dictyostelium discoideum

KEGG orthology group: K04536, guanine nucleotide binding protein (G protein), beta 1 (inferred from 86% identity to scm:SCHCODRAFT_72736)

Predicted SEED Role

"High-affnity carbon uptake protein Hat/HatR" in subsystem CO2 uptake, carboxysome or Carboxysome

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (372 amino acids)

>mRNA_5874 K04536 GNB1 guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 (Rhodosporidium toruloides IFO0880)
MSAQADIQEKIAAARREAEMLKEKIRAKREQLADTSLRAMAAEIDPLPRIAMRPRRTLKG
HLAKIYAMHWAQDKRHLVSASQDGKLIVWDAYTTNKVHAIPLRSSWVMTCAYSPSGNFVA
CGGLDNICSIYNLRAKEGGSSVKVARELSAHTGYLSCCRFLNDRQILTSSGDMSCMLWDV
DAGVRIIEFNDHTADVMSLSLGPNQNVFVSGACDTTAKVWDIRTGKAVQTFTGHESDINA
VSFFPNGDAFATGSDDASCRLFDLRADRELNQYTHDNVLCGITSVGFSVSGRLLFAGYDD
FNCNVWDTLKGERVGVLAGHENRVSCLGVSADGMALCTGSWDSMLKVRFPPLSPPLLPFF
FELTQFRSQIWS