Protein Info for mRNA_5879 in Rhodosporidium toruloides IFO0880

Name: 14247
Annotation: KOG2624 Triglyceride lipase-cholesterol esterase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 787 transmembrane" amino acids 308 to 331 (24 residues), see Phobius details amino acids 525 to 548 (24 residues), see Phobius details amino acids 559 to 576 (18 residues), see Phobius details amino acids 582 to 603 (22 residues), see Phobius details PF04083: Abhydro_lipase" amino acids 365 to 428 (64 residues), 52.8 bits, see alignment E=2.5e-18 PF00561: Abhydrolase_1" amino acids 411 to 516 (106 residues), 31.1 bits, see alignment E=2e-11

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (787 amino acids)

>mRNA_5879 KOG2624 Triglyceride lipase-cholesterol esterase (Rhodosporidium toruloides IFO0880)
MAPAHRPPGPTQLQTSTQVLTAHTLDDPHGIDKRRRPSPSAGSPAAALSSALRPPADSLL
ARGGSPHNLQAFTSHAPSSLGLTNLVALDLDVPTPGIEVADLSTPSSNGTGGSSEGPGSP
SSRSSGSGASGNRARRQRHEVDKGYSGDTIQDKVRADLHLGVPGKKQLGPRDYLSGPVDE
LVIPLPRPSPLSRPNSPLPSPAVSIASASTPGVTLPNGCADEEQNFLLPHIASPSGEYPD
GDEGCDENGLPIITDSTPSRPRPRAFTLSHSAFGSFGTFPSTARAGPLAPPTLKSRVKLF
FLQLLSNTASTAFLVFIIIWALASRFLAAIIRTLKGQHADRTRREWDTDEAQAERKQEKV
TKDIRYYALRCGFDVVEQTVETKDGYLLKMFKVVCLKKKEKVHSDGRKGFPVLIQHGLFQ
SCGSFITSEERSLAFWLAEHGDYQVYLGNARGVFEMGHSWLKRSDPRFWDYNIKELALYD
LPAMVDHVRRDTGYDKIAFIGHSQGNATMFCALAQGMVPELGEKLSLFIALAPAVYAGPL
TTGFPFSAIKSMKWKTWRRWFGVLDFIPLMRISYNWVPSRIFGLLGYQMFAFLFNWTDAN
WLLDRKAKKFCFMPSPVSSASVFWWTGYNGFSTRGCILDTNADKWFDKRFPPLAIHHGGK
DYLVLTEPLLERLEKQETDVQVIRVQKMDDGEHCDFFWHIDAVELCFHSFLEDIERTRPR
YPEERRRSHSPQPPAHSPRPSRNGTAADVKELKENSPLEDGEVGRQTEMASEGERRDVKV
KRTAEGY