Protein Info for mRNA_5911 in Rhodosporidium toruloides IFO0880

Name: 14279
Annotation: ProSitePatterns-EGF-like domain signature 1.-PS00022,ProSitePatterns-EGF-like domain signature 2.-PS01186,ProSiteProfiles-EGF-like domain profile.-PS50026

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

Best Hits

Predicted SEED Role

"D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4)" in subsystem Peptidoglycan Biosynthesis (EC 3.4.16.4)

MetaCyc Pathways

peptidoglycan maturation (meso-diaminopimelate containing) (2/12 steps found)
peptidoglycan biosynthesis IV (Enterococcus faecium) (1/16 steps found)
peptidoglycan biosynthesis II (staphylococci) (1/17 steps found)

KEGG Metabolic Maps

Peptidoglycan biosynthesis

Isozymes

Compare fitness of predicted isozymes for: 3.4.16.4

Use Curated BLAST to search for 3.4.16.4

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1093 amino acids)

>mRNA_5911 ProSitePatterns-EGF-like domain signature 1.-PS00022,ProSitePatterns-EGF-like domain signature 2.-PS01186,ProSiteProfiles-EGF-like domain profile.-PS50026 (Rhodosporidium toruloides IFO0880)
MPLHGPRPAPAKRASVTPHPPASSLDHPPALRSRWTFLDRPAPDLSLSLSDASGARAHES
LPERASGFAVDSKRDSQGLAGSGAAAASVDEFGLLRADLASRYGQSRTASYGSRFLAVEN
SFNRSGSSAPDSFVDPYMAPPRPASTGGEPTSPPYASAPPHSLQVDLAGRPLPADPPAVD
PFSTAVARQPSLTAKQAKWRLSTASGLSLPFKRSQEDLTTGSAPSSRGYWDTTLDLTGST
FASGSSALPDATQERPGPRPVQPRPSNLDMPSLPPRCYSPEPLSASRRLSTASRSSTSTS
ILEFPELLEGEEGFYHLPISPARPRQSTTSPFHLAEGSAGTDLSFPLPPTATIAPSSIFD
RAAGSSFHDSHIHALTPSPTFSLPSSAPPPTPPPPLPEFVSVFLDPIALPQSELPPSDWR
KSHVRQVDSVSSSIAAAPLRQSLRHRASGALQREKEASTQDEKERRSTDWLEGVAATSGS
STGSSKLRWADRAGPGWSLKFEKQPRGTSLQSRRNVKGSSLLSSRRARIAAAVLVVVALL
LIVGLATGLTRKAASAALTNSCSCLHGGNAEPTTDGGCSCSCPAGWGGTSCHLDATCANG
VAQGLLDVAAHSSDLWQPTVDLARLPNVLNRYILPTSSSASCASQLALLEVPSLSVSTYP
TRLAWTEAALVHTLALTESNSSLSQLRPFASGLDFAQYGDEPASKPNSNYEAIVGGYTWD
LATMQRTVQNVSWIAAVKPDTATAAMIAAAPQSAAALDTVTNNALAASKQRSTALAHYWN
DTLGLSPAQLKSFRQAVQAADILIPFDASSTTLQSTGQSSLPLALACQSDLVVGVVAKIN
EVEAVVFGLDNVTTAENATCQDRPVYGLLNLLHLAQPFASSDMRLDTSQQALVLSSSSAL
SDRASVHAGDTLVAGPSAPASTTVSAPLSIEHFGLLSSATSAIDHVLFDYLTLLPVSTAQ
ALVDYILSSPTSPPPSSSPLLSTTVPPLEVQVWGGVKAGDVARIVSGLTVSSSNDTLFFG
SSAGDALRSWASGATTSGMTIEWALNAETSGVARDSSIGGSAAFEQVWADAKKGRWTTAQ
QVWATLGKAGLVG