Protein Info for mRNA_5920 in Rhodosporidium toruloides IFO0880

Name: 14288
Annotation: K03022 RPC8, POLR3H DNA-directed RNA polymerase III subunit RPC8

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 236 PF03876: SHS2_Rpb7-N" amino acids 8 to 77 (70 residues), 68.2 bits, see alignment E=6.8e-23 PF08292: RNA_pol_Rbc25" amino acids 79 to 230 (152 residues), 107 bits, see alignment E=8.5e-35

Best Hits

Predicted SEED Role

"DNA-directed RNA polymerase III 25 kDa polypeptide (EC 2.7.7.6)" in subsystem RNA polymerase III (EC 2.7.7.6)

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 2.7.7.6

Use Curated BLAST to search for 2.7.7.6

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (236 amino acids)

>mRNA_5920 K03022 RPC8, POLR3H DNA-directed RNA polymerase III subunit RPC8 (Rhodosporidium toruloides IFO0880)
MFTFCIQKDTIKVEPRDFDKEPAEAIREEIHRRYANKVIPNVGLCISLLDILSSTEGAVL
YGDGCFYYKCEFRLIIFRPYIGEAILGKVKSQSPEGIVVTVGFFDDILIPPNLLPDYSAF
DHDRRAFFWLPSDGTEPHRPTIKDLLSSPEDSKLFIGRKDWIRIRVEEEHWDDTSPTSGK
SQPPAAAGAPGVQGEQQQPSVMDTARTNGKPPYSLICSMAEDGTGVLDWWDEEAEE