Protein Info for mRNA_5922 in Rhodosporidium toruloides IFO0880

Name: 14290
Annotation: KOG2615 Permease of the major facilitator superfamily

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 552 transmembrane" amino acids 48 to 73 (26 residues), see Phobius details amino acids 85 to 107 (23 residues), see Phobius details amino acids 119 to 136 (18 residues), see Phobius details amino acids 142 to 160 (19 residues), see Phobius details amino acids 177 to 200 (24 residues), see Phobius details amino acids 220 to 242 (23 residues), see Phobius details amino acids 345 to 373 (29 residues), see Phobius details amino acids 385 to 404 (20 residues), see Phobius details amino acids 416 to 435 (20 residues), see Phobius details amino acids 446 to 467 (22 residues), see Phobius details amino acids 485 to 509 (25 residues), see Phobius details amino acids 516 to 539 (24 residues), see Phobius details PF07690: MFS_1" amino acids 53 to 500 (448 residues), 121.9 bits, see alignment E=3.1e-39 PF00083: Sugar_tr" amino acids 88 to 245 (158 residues), 34.7 bits, see alignment E=9.9e-13

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (552 amino acids)

>mRNA_5922 KOG2615 Permease of the major facilitator superfamily (Rhodosporidium toruloides IFO0880)
MAGTAGLASDVGRRREDARAGDERQPLLGRTEEREETKKATPLPLTQLLVLSLMRFGEPV
AFTLIFPFISQFIEDLHVTDDPSKIGYYAGIIESIFAFTTFSTVLAWGRLSDRIGRKPVL
ISGLTGVTLSIVSFGLSKSFWMLVVSRCIGGTLNGNVAVIKSVMGEITDESNQGRAFSFL
PPAWSIGSIIGPLLGGYLSHPAENFPSLFGHSTFFRNNPYALPCFVGALFPFLGALVGLF
FLEESLKPAKPVAPVEIERERRKSVSRHQRFVAATSTTLPAPPGQLRRFEEDDGTDSGYS
TPAREASVSRAAEEGVSAEQMANEGAAIKAKKPPGFRELFTPRVWASLVTYALLALETVG
LDALFILFCYSSVKIGGIGFKESDIGFALSLNGLLSVTLQVIFFPPLQKRFGTVRLYRIF
MSLWPVVFALFPVMGWCARERGRREVWSVMVVMLALKSIANMSYGCNMLNITDSAPSKRL
LGTLNGVAQMVASLMRALGPFTASSLFAFSVSHHLWGGNFVFLVMVLLALVGAGSTFALH
EGGRASAEEEEG