Protein Info for mRNA_5926 in Rhodosporidium toruloides IFO0880

Name: 14294
Annotation: K02989 RP-S5e, RPS5 small subunit ribosomal protein S5e

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 206 TIGR01028: ribosomal protein uS7" amino acids 21 to 206 (186 residues), 299.2 bits, see alignment E=5.3e-94 PF00177: Ribosomal_S7" amino acids 61 to 206 (146 residues), 130 bits, see alignment E=2.9e-42

Best Hits

Swiss-Prot: 76% identical to RS5_NEUCR: 40S ribosomal protein S5 (rps-5) from Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)

KEGG orthology group: K02989, small subunit ribosomal protein S5e (inferred from 84% identity to lbc:LACBIDRAFT_184639)

Predicted SEED Role

"SSU ribosomal protein S5e (S7p)" in subsystem Ribosome SSU eukaryotic and archaeal

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (206 amino acids)

>mRNA_5926 K02989 RP-S5e, RPS5 small subunit ribosomal protein S5e (Rhodosporidium toruloides IFO0880)
MASTDFSPVPQDVLAANANGILLFNKWDASEVEVKDISLTDYIQVRNSILLPHTAGRYAT
KQFRKAQMPIVERLVNSLMMNGRNNGKKQMAVRIVAHAFEIVHLLTDQNPIQVLVDAIVN
TGPREDSTRIGSQGTVRRQAVDVSPLRRVNQAIALITIGVRESSFRNVKSISECLADELI
NAAKGSSNSYAIKKKDELERVAKSNR