Protein Info for mRNA_5936 in Rhodosporidium toruloides IFO0880

Name: 14304
Annotation: HMMPfam-Homeobox domain-PF00046,HMMPfam-Predicted membrane protein (DUF2231)-PF09990,ProSiteProfiles-'Homeobox' domain profile.-PS50071,SMART-Homeodomain-SM00389,SUPERFAMILY--SSF46689

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1108 transmembrane" amino acids 516 to 539 (24 residues), see Phobius details amino acids 553 to 577 (25 residues), see Phobius details amino acids 610 to 630 (21 residues), see Phobius details amino acids 642 to 661 (20 residues), see Phobius details amino acids 708 to 728 (21 residues), see Phobius details PF00046: Homeodomain" amino acids 68 to 117 (50 residues), 46 bits, see alignment (E = 5.7e-16) PF05920: Homeobox_KN" amino acids 88 to 116 (29 residues), 23.3 bits, see alignment (E = 7.5e-09) PF09990: DUF2231" amino acids 552 to 671 (120 residues), 33.8 bits, see alignment E=5.9e-12

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1108 amino acids)

>mRNA_5936 HMMPfam-Homeobox domain-PF00046,HMMPfam-Predicted membrane protein (DUF2231)-PF09990,ProSiteProfiles-'Homeobox' domain profile.-PS50071,SMART-Homeodomain-SM00389,SUPERFAMILY--SSF46689 (Rhodosporidium toruloides IFO0880)
MTVASGGDEAYQPFEEAMRASICRVFQRRTSDFRQRLFEEVRAAQLRHSLSPPAPPSPES
PATGRPKQFTAEVLAILEAAFEASDSVSRGERRELANVTGLTERQVLTWFANQRQRRNKK
KERRVPGTPYVRPDLAVPSTPTSRIRAPMHVHQQRRTVSGSSLGSSGSSLVEYAEQDLVL
PPLDPSVQQPLFLPDVPVLGDVTAPTPIAATFFATPSSSRFDCSASSVSSSLDDFSIPQP
PRAAYDPSSLFSTSPSNASTSSFDLPPLDAPFEPAIVQAPAPTDAWMDDEFYRNLFGSLG
LDAGEGAGVKLEGGEGGGLTLSLDAVRAELEGMQGVEADLSESECILSELKQSKRVGGAR
RRASWATTSILDAGGGRLNPPPPPRRPSSLARSTRRTRTRCDRRAGLNALLCANQLASVS
RPRSLLEAPDDRDEPLTSPGKRTTSRSLALSPCLASTHLLSLETDHADSHAQGAHEMSSA
AQKADAVATPVAQVGMGQVKSWGHPLHPATVHMPIGLLSISFGLDALQIAPALSSGLTYL
KLLPPAAVINTLSHYTGAAGLLFALPTLATGIAELYGMWTGQVKQKESVKATVADAAVKK
DIAGEKLKVTLTHATLNDIVIGIAAYNWWIRRQSSQLILPRFNALLSAAAIPLFLYSAYL
GGSLVYEYGVGVQRQGEAAEIKQKAQKEQQAESLPASLRFRPGLPTSLLLTSTSSSRFAT
LLYLSALASPRFPAVFARLDPLAAPIAHRASFSRSPLLPLVTSDFDRIAPMVSAALVHGT
LVNAVSLQCAARVSARPPTMTPTLTRLYNLSRAELSSRYSNNSLIDGEPFTTWFERLRAI
QAEQRRAAVEEERRLTRSIICAKCAPKYATEPGPRWHQLFPQDKRYGRGWKMLDWVQYRR
EKEMYEKCVRADEEGAPRPVDKYARHQEKEEDGEAVDAGHGGGGAGHTSIRPRYPACACP
RCVWQARDAIEELNRDTDDLKLPEFVARYGLHLEWHWGQSDDLASVVRLYKEPPKKERHD
ECEPKEERSEAGWVYEMCGSDMTVEVYSKPLNLQPVLEEWAKCADGASLKVKELCEDWDL
VFGDKTVNEGADISPKVYIYADQYNSPY