Protein Info for mRNA_5941 in Rhodosporidium toruloides IFO0880

Name: 14309
Annotation: K14676 NTE, NRE lysophospholipid hydrolase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1609 transmembrane" amino acids 27 to 56 (30 residues), see Phobius details amino acids 66 to 86 (21 residues), see Phobius details PF00027: cNMP_binding" amino acids 1029 to 1111 (83 residues), 57.1 bits, see alignment 1.6e-19 PF01734: Patatin" amino acids 1388 to 1435 (48 residues), 48.2 bits, see alignment (E = 1.6e-16)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1609 amino acids)

>mRNA_5941 K14676 NTE, NRE lysophospholipid hydrolase (Rhodosporidium toruloides IFO0880)
MDATAPAPPSLANDLRTLFDLISRLSYFLAHTAVHLTARAIAFLTLTLPASTFSLIHYSA
SLTFHLTFLKLLAFFLLVSTVASYVWKVRYLNRYTELRDLPGGNRIKGNEGFDLHPDLAA
DQASSGFHNYLDEFLSAIKVFGYLEKPVFHELARHLQTRRLVAGDTLDLSRDKSFYIVVD
GRVEVYARNPSAQHGDEAATEGYETEEEDEEGKEWQLLNCVESGGTLSSLFTILSLFTED
VKMRYEEEQVRTEESSDEGGPSPARERDADVSAFDLEGGSANGAGRPVRPHFPGYNSTNT
ARLGEETEDADDEGAAATAAGEESESTLAMSGAEVGEDRGRLDHLDSSIAPSDSRSNATT
PSLARSPALDATTGFFSPPLTSPTSPSVGSTGSRKSSLGRRPAGFSFTSAAPASSRPRAT
SRPNAPTHLNSSASGSRIRPPQKPHAHHQHHHHHAHAKRRQSTGPASMAKEATIARAATD
TTLAVIPAEAFRRLTKKFPNAAAHIVQVILTRLQRVTFLTAHKYLGLTREVVRTEQAIND
LACYPLPAAFWESGGIQRLRARFVPETKLDGPGEEEGYGDWEQREDYFGSRRDVLSMKGD
AKGGHQGNRAGAMGRRMNMPLETPYAGPRMGGVFWDSSNDEHSSDNAVRLKYRQPGSSFT
ASPKSRMRTLGPAPPGAKSAALSRKAGDLLTMSTVSEDMRGAGSTVIQTPRLERLNTSNL
HDNSERDFDLRDAVMECISKAIGLVQPHVTPSHSVDASPMVRPHEHGKSLRDQAVFNSSF
GSLSFLGLQGLHDDESSTSSGFSALREETGRDAGAVGSFASMDLENEVEILYFPTGSVLV
KEGEKNAGLYFVIEGFLDVSMPEAESAQAARGQMPRRTSHDDEEPAFKGPALGRQGSKTG
STTRPKMSSARSSFRDGVGATGPTTVRKPVPSTAASGPAPPPQQPKTKSIHLFTVRPGGI
AGYLSSLSGFPSYVDIKAKTECYVGFLPAKALERIMDREPIVLLTLAKRLISLLSPLVLH
IDSALDWMHVSAGQVIYRENDPADSFYIVINGRLRSITERQGGGVQVNGEFGQGESVGEL
DCITASPRPSTLHAIRDTELARMPMTLFNAISVRHPLVTIQISRIIAARLRTQVAREAKM
AGGLPKELGMPGMGDGSMGKNNFNLKTVAILPTNRHVPVSEFAAKLHQALETIGAPTSYL
NQATVMQVLGRHAFSKMGQLKLAGWLAETEQKYRIVLYVADTAVSAPWTQTCIRQADCIL
VVADGGADPELGEHEKLLVSMKTTARKELVLLHAERNVVPGTTRPWLKSRPWVHAHHHVE
MLGATPEVNRSELHDPAAVVALRKIAARVELQISKYKKTQPRPAPQRAPALNDFARLARR
LCGKSIGLVLGGGGARGISHIGVLRALHDRNIPVDMVGGTSIGAFVGGLYAREGDLVSTY
GRAKRFSGRMSTLWRILTDLTYPVVAYTTGHEFNRGIYKSFYGTHIEDMWLPFFCNTTNI
THSRMDVHTSGYAWRYVRASMSLAGLLPPLCDEGDMLVDGGYVDNLPVSVMLEQGAASVF
AVDVGSVDDTSPRNYGDTISGWLLLLQRWNPFGKPVNIPNITEIQSRLT