Protein Info for mRNA_5948 in Rhodosporidium toruloides IFO0880

Name: 14316
Annotation: HMMPfam-Zinc finger C-x8-C-x5-C-x3-H type-PF14608,ProSiteProfiles-Zinc finger C3H1-type profile.-PS50103,SMART-zinc finger-SM00356

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 867 PF18044: zf-CCCH_4" amino acids 83 to 103 (21 residues), 27.6 bits, see alignment (E = 3e-10)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (867 amino acids)

>mRNA_5948 HMMPfam-Zinc finger C-x8-C-x5-C-x3-H type-PF14608,ProSiteProfiles-Zinc finger C3H1-type profile.-PS50103,SMART-zinc finger-SM00356 (Rhodosporidium toruloides IFO0880)
MVAAPETQHSANTAAAPAAAVHTQQHAGEGVNKLGQGQVNGAEQGEQQGKQGQSEANGPT
GANGAAADASTNLPPPDVARNIPCRYFPLGQCKYGEHCIFSHGIPGVSGSPGIPPSPSVA
SQIAPAQQGQPQPQAQPQQPQHQQMQHQQQQQQAQMMAMSMDQAAYAMQGMPMYYPEQGF
EYGYPQPPFGSQPGYYYPPPFGGYPPAAAFQQPFPPQPYYGAPAVPSQPIMPAESPVAVP
VPVASPPAASSTPDSQQAAPQASTSPAPAAETSVAPQPSTSAAPSPPVSTEAPQTYPTYS
AYPLADGSAAFVPPPPPVAATSPQTSFGPDGVPLPRQAPSLHTFFQTSATVPPVPASAAS
PPAGASLVPAVAPIPLAAGMPVVTPNGFPKGLGRGPGGPRRGMPGAAAAAAAAAAAAGAN
GFGPGMGKRRSFPGPRPPCSFFEANRCRNGDECPFVHLLPDGTDARGLGRGMIGADGRTD
HPEASGGMPPAWLANQKAVKTANHTARKQLENGAILNGGYSYRERMTGPVVAGPQGMQQQ
RRFEEERARHMQAMQAAQAQQPQAPAGQQQQPTEAGVEQAQTTAAPVAQQPHHPHPHPQH
VHHHHQQQRHFGSGAHRAGSLPPGSAAPQLVAAINGLTRRIPPAHIQHQQHNVQHQAQLP
QASAPAAQQQPSQQKSAQRVPSGDEFPALSPAAPLSPAAEKDGFVAASDSPSTEPAKVEE
KPAAPVEAVKSPSSETDGFVMVSHDDAAEAPSSAAPAESAAPAPSPAPAAPPKLLGGWAS
AAARGASVVVPEKPKPTRSFSPMSKPASPASVDGGDKKASTDAAAPAKKDAKKDDDGFVK
KEGKKRNGGAKGAKHGGAPAAQVAIKA