Protein Info for mRNA_5955 in Rhodosporidium toruloides IFO0880

Name: 14323
Annotation: K11654 SMARCA5, SNF2H, ISWI SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1086 PF04851: ResIII" amino acids 136 to 296 (161 residues), 24.4 bits, see alignment E=6.8e-09 PF00176: SNF2_N" amino acids 154 to 450 (297 residues), 224.6 bits, see alignment E=3.8e-70 PF00271: Helicase_C" amino acids 474 to 585 (112 residues), 62.2 bits, see alignment E=1.5e-20 PF09110: HAND" amino acids 734 to 836 (103 residues), 95.6 bits, see alignment E=8.3e-31 PF09111: SLIDE" amino acids 895 to 1010 (116 residues), 126.8 bits, see alignment E=1e-40

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1086 amino acids)

>mRNA_5955 K11654 SMARCA5, SNF2H, ISWI SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 (Rhodosporidium toruloides IFO0880)
MKSVKGGKKRERAQAKKEAKLRVNATLQARGEAQEALKSADSIKRFTYLLGQTDLFKHFC
DLKAQRDPTFAKLLAEAENAGKAKGRRGKAAQSRGRKSEKEEDNELLQAEEGTDGLAEGD
GPFVFTESPAYVKGGKMREYQIQGLNWMVGLHYNGINGILADEMGLGKTLQTISFLGYLK
FIRNIHGPHLVVVPKSTLDNWAREIDRWVPGFSVVLLKGTKEERQELIQDRILPGDFDIC
LASYEICLREKSSLKRIPWEYIVIDEAHRIKNVDSMLSQIVRLFKSRGRLLITGTPLQNN
LHELWALLNFLLPDVFSDVADFDAWFDKQGDTSDKAVEAASTEATAPSTADAAKDAKATE
DASNNVVKQLHSVLRPFLLRRVKMDVEKSLLPKKEINVYVGMTDLQRKWYKMILEKDIDA
VNGAGGKKESKTRLQNIVMQLRKCCNHPYLFDGAEPGPPFTTDEHLVEAAGKMVVLDKLL
KSMKAKGSRVLIFSQMSRVLDILEDYCLFREYQYCRLDGGTAHEDRMEQIDAYNKPDSEK
FIFLLTTRAGGLGINLVTADVVVLYDSDWNPQADLQAMDRAHRIGQTKQVYVFRFVTENA
VEEKVLERAAQKLRLDQLVIQQGRAQVSNKAANKDELVDMIQHGADKIINSSESMAVADD
IDEIIRHGEEKTAKLNSKFSQLSFDELQIFNTGPQATTTQWEGEEYGGRKAGGKPGLLWI
EPSKRERKTTTNYSIDEYYRGQLKGGSGRPGAPRGPRRPRQVATDDFKFFPARLQELQEK
EQLYHKKTKGEQAQLRVDPNLTPEELEAERQAEQEAIDEAEPLNEEELKEKEELRELGFD
NWHKREFQAFIRGMELYGRDNYELIHRDLPTKTIEEIKEYAEVFWTRYQEIEDHERLIAK
IENAEGRRDKEGALWGLIKRKVAETKYPLTQLKIVYANQTKGKSYSEDEDRFLVVELAKY
GVGKDDTYERIKRDINEWPAFRFDWFMKSRTAQEIGRRCQTLTNLIDREYNPGEDGDGTL
TGKARRGRKSTAKDGDNASTASGGRKRKAPGAATPALGGADDGASNASASRASTPAAGPA
PKKAKK