Protein Info for mRNA_5975 in Rhodosporidium toruloides IFO0880

Name: 14343
Annotation: K14636 SLC18A3, VACHT MFS transporter, DHA1 family, solute carrier family 18 (vesicular acetylcholine transporter), member 3

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 540 transmembrane" amino acids 43 to 65 (23 residues), see Phobius details amino acids 87 to 108 (22 residues), see Phobius details amino acids 116 to 133 (18 residues), see Phobius details amino acids 139 to 163 (25 residues), see Phobius details amino acids 175 to 198 (24 residues), see Phobius details amino acids 205 to 224 (20 residues), see Phobius details amino acids 326 to 344 (19 residues), see Phobius details amino acids 358 to 381 (24 residues), see Phobius details amino acids 392 to 410 (19 residues), see Phobius details amino acids 416 to 440 (25 residues), see Phobius details amino acids 455 to 476 (22 residues), see Phobius details amino acids 486 to 509 (24 residues), see Phobius details PF07690: MFS_1" amino acids 52 to 371 (320 residues), 129.3 bits, see alignment E=4.3e-41 amino acids 347 to 508 (162 residues), 54.8 bits, see alignment E=2e-18 PF12832: MFS_1_like" amino acids 316 to 477 (162 residues), 27.4 bits, see alignment E=4.1e-10 PF13347: MFS_2" amino acids 345 to 508 (164 residues), 33.1 bits, see alignment E=5.9e-12

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (540 amino acids)

>mRNA_5975 K14636 SLC18A3, VACHT MFS transporter, DHA1 family, solute carrier family 18 (vesicular acetylcholine transporter), member 3 (Rhodosporidium toruloides IFO0880)
MVLQWLRTRRRTKRSEEGGANDDAASAMPDSKPPILLRQRCSTWFIALTVGFGVLVDLSS
YSLAVPVIPFRLEAIGYAEDEIGGLTGWLVAAYAGGLIVSSPPVAYIGARWKNRQIPLTL
GLLFMAGAVIMFMEANSYALMVVARILQGFSGTVLWTIGLALVTDSVPEERVGKVLGWVM
IGFSFGQAIGPPVGGVLYARMGWRAPFVFSLILVAIDLGLRMLIVEKHRAVGWIRRGVEV
RGFEAPGWVDEVKTVVEEPRKEQGEKTIPAGDAEDNARIPVPLADSTFSDTALAPSSSRA
PSHSHSHSRIPSHWIGFLHLLRHPRALTSFLLTLLNGIIAGGLQDTGLTIYLEEEYGLSS
FGAGLVFLGIVVPTFFGSPFAGWISDKYGTKWIMFAGVVLSIAVYPLLIIRGPLPLFIFF
LALVGLSISCFITPSTVDLSLVASSHTSITTAHTFAIFNLAFSIGALVGPIIAGQILSGL
GVRKGWVALTVLSAGLSAVFVPPVLVYVGGPLKLGRGKKDAQAREEEGGGDRTEEKARET