Protein Info for mRNA_5982 in Rhodosporidium toruloides IFO0880

Name: 14350
Annotation: KOG0379 Kelch repeat-containing proteins

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1449 transmembrane" amino acids 581 to 595 (15 residues), see Phobius details PF13854: Kelch_5" amino acids 338 to 376 (39 residues), 28 bits, see alignment (E = 5.2e-10) PF13964: Kelch_6" amino acids 341 to 392 (52 residues), 38.5 bits, see alignment (E = 3e-13) PF01344: Kelch_1" amino acids 341 to 383 (43 residues), 38.7 bits, see alignment (E = 1.8e-13) PF07646: Kelch_2" amino acids 341 to 386 (46 residues), 22.3 bits, see alignment (E = 2.9e-08) PF13418: Kelch_4" amino acids 341 to 382 (42 residues), 37.6 bits, see alignment (E = 5.3e-13) amino acids 391 to 441 (51 residues), 28 bits, see alignment (E = 5.4e-10) PF13415: Kelch_3" amino acids 351 to 399 (49 residues), 38.3 bits, see alignment (E = 3.8e-13)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1449 amino acids)

>mRNA_5982 KOG0379 Kelch repeat-containing proteins (Rhodosporidium toruloides IFO0880)
MAIFKSKHKKNEGSASNRADATGQSPPVGPGGFEQPLRDSGLKGSVGRSGIPVPSAGGGS
GLYSSTGSNGYAPPIGGANNIPPPVGYSKPSHIAPPPSAQQQPQPGPQPSSSHTVLYPWS
QRRVNLLPAQLLPPPSPADSPSVPLTPLLGPLSPLPFPRYGHSVNSVAAATPTGDLYIFG
GLVQNSVRNDLYLVQANSSPNLASSGGKSNPYTPLNVGLIETRGEVPGPRVGHASVGVGN
VLIVWGGDTKSRPEDKQDDGLYLLNLSTRDWTRVKTVGRAPEGRYGHAVAMVGSRFFVFG
GQTDDGGFKNDLCWFDLQKLKQGQPSWSFIEYQPGQVVPPPRTGHTCVTFGDSLYIFGGT
DGQYHYNDTWQFDLSTSTWTELACIGYIPVPREGHAATLVDDVMYVFGGRGVDGKDLDDL
AAFKISNHRWFMFQNMGPAPTGRSGHAMATFQKKILVIGGESYTSEKADDPSCVHVLDTT
KIKYPPDSRPVPQSQPAQQPASAPPAQPPSQPSPPTAYPSQLPTSPTAASTGISVVKRKS
SIPVASAGGSNGPPPTADELRTRAASPTGSTKRDLKSSLGAAAGGAAAGGIAAAMLNGSN
GPSNAPPQSAAPQQNGRPTRPARPDDAEAFLAERARSPTGSLRDREPRMRQASGGSATSG
GPAPSGTSPSLGAGGMASLTGAFASPPPHPPHPSTPEQPASQANVPADAFYYRSPQQQQQ
QSSSPVDERAVREKDDKIAQLEKEKRWLVLEVQKAREKGFAADSGEGGEEVLRDAGAGEE
TDNERRLKEALREMKRELAMVKTSMAQQVAAVNDRFANSDRSRAAALQEASYYRAKLAAL
ESGSPSDVAKLERDRTAELEKKLVDVVSARSALEAQVAKLEQDVSHHQTMRSSAEERHQA
VLARANDAEQSHARVLGEFNGLQKQAYHNDRSLADHVEKLAALQTTSRQLEGDNARLKEQ
IDTHESSIANWLATLEASEAALTAAQHRNDELSTSWDKATTELTQQQLRVAELEHQLEQL
RIERDAALAKAEDAERQHQSTREAHDKVHALASGGLAQLLAAHRDGQAMRSIGSRDIEDL
PAAHADRLRAMEDQMASVQQLHFDAQSKHESLAAELAAAREREAGLVTQLSQLRTQLATV
QAQHSHAMDDLGKHRLLVAQHESSARDISRARDAAEVKAGFLRSILADHGLAAPSEDEVA
ARFPPMNGTESSEQLAQRVRELELEVESRQRQKQQLEERMREQEGEVSRLRDELDRSKGG
VEAEHKERANKMQEELVALQDRHKQLEATHLKAVQYVKGTEKMLRRMKEELTRYKERCEE
LESPQRQAELDGLRSQVHEFRGLSESSSRETQELHQRIAALQAEYQQTVRQHEEQSHSKV
SNLEAEVDKLHADLAKAQHDLEETLAVNASLNKELQSALKNPTSRRIGSAAGFTGGSEDV
ARLHTELEQ