Protein Info for mRNA_5989 in Rhodosporidium toruloides IFO0880

Name: 14357
Annotation: SUPERFAMILY--SSF52047

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1465 transmembrane" amino acids 562 to 581 (20 residues), see Phobius details amino acids 601 to 619 (19 residues), see Phobius details

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1465 amino acids)

>mRNA_5989 SUPERFAMILY--SSF52047 (Rhodosporidium toruloides IFO0880)
MCTAKLLVSRTNSSFFKRHILPRYAHHFRAVTFDALHSHSKFNAFLRLLPRLPNLHTALL
PQSGFEDLMTEEDDYFKTPTWESLGDSRTTLAQFLGCLVKLDFQFVYWHHIHHTAGAASS
LQVLHLRDHVMKPDSDILIDILQLLPRLRELSMDRIDDDSFDDVATGLQGQRPPLVKLIG
VVNQDAGALFRFAHLFHNTLTQLTLTTPYKLRGTRNPIEISLPRLRSLHVRGEAESFDFF
RRLSVEQLPALTGITVHGRGLVDIDMHEIVEFCGDFKRAGRPLRTIRIADTHSYLDSSAL
ELIHQELSHPETHIAAAPSDPFLAQAFLDPRALCREAELGRPIDSYRIRPAVEQTVDFIN
DWLAQARNMNDDGAYARLAVVLQRAEVERVIKSVRGGQSSQLWSRNSRRFSSWIPLERVA
ASPALFPELLRSSPSSPSLVLACLPLTDSGGYSSSLTASFESTEPPNLAMARLQDLPHDL
LLDILFLASPTLPAEEGRVLMWQALLKSFRGPSRNLHGIYRTLFPYCVDSTSGTVNTLLK
KTLRGETLTSVACLRMFGVDSALSFGIILSHLPHLVVLRLGADRYKPSVPGFDLYALDKL
VHLKFLGLSGFFLYLSLPLQQLGVIEVELLECRVASTCAVNEFFSQVPTLTALCLSPLNI
RIKSILPDPSALQSLEYVQLQPREEDFEDALDRDAVRFFDKCPNDCLTVLVHPVWAGAPS
PLTGALVMSLLVEYEVDEDEREMYSFIPSDISRIAEWVESSPPNLQSVALPMMWHPAYPE
EDPYLQVVKYAAHEIINACEENDVEVVYYADWDREMGFCQELKTGEWTVMTGDEPRGEDG
TLFTWGGSWPETDEDLEAMLRGELSGGYETERAGDDEMQSTESEGEREDSSGDEGGSERD
GAESASRVGVEGGSEGEVEERKRHAVNTRFEQHPKLGQSLPCSVLPLGADTVAGYFSHAP
PDASRTRPETLTLLPPPTRHLLSLHQPSSTLHSDMTPPSAQLPDSNPSAPRATLEGLPTE
VKARIVEHCAMQDERWKELRKHLEACVDTAEKPAFEGAITNTDVRHAFQAVKEAYKSTIG
ALFRLSRLWSTLAAPFLFEEVRTSQTNSLFFHHHIVPRHRHFFRKVTFDAHDPHLFHAFI
QTLPYLTTITEAVITVGGFEDHLDDGPESGGISWAALTDSSPFGLATFFSQLTHLKTDIP
RYEQVDKLVSAAPNLQSLHLGYVDHEDGRLVRILLSARGEHPLPAITSLKVSVNGDVGST
MRFAQHFASSIERITFDLAFDLNFDYADDVQFPKVRTLKLEGDPENIETFLECMTRDQFP
ALVELVICSHQLSIQLVSTMQEAVKTVANKMPRLEKMHLIDPQRLLDDSDCDAMRQNLDN
HSIELTTSIVPNFVSSTIFLADDRIDDIRLGGPVRFDIYRPDIKRTLDFLGEWFERAEGP
GADGELARLARVLQQAEFERVARAC