Protein Info for mRNA_5993 in Rhodosporidium toruloides IFO0880

Name: 14361
Annotation: K12847 USP39, SAD1 U4/U6.U5 tri-snRNP-associated protein 2

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 717 PF02148: zf-UBP" amino acids 240 to 300 (61 residues), 40 bits, see alignment 8.1e-14 PF00443: UCH" amino acids 341 to 662 (322 residues), 104.4 bits, see alignment E=1.5e-33 PF13423: UCH_1" amino acids 341 to 418 (78 residues), 24.7 bits, see alignment E=3.5e-09

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (717 amino acids)

>mRNA_5993 K12847 USP39, SAD1 U4/U6.U5 tri-snRNP-associated protein 2 (Rhodosporidium toruloides IFO0880)
MATQYSKLKVAELKATYTDEHHTKQELLKERDLPVSGLKADLVARLAESDAASPATAKPA
DQPAPIADIPDADAAVETVADGGKEGNEAGGMGDSLPSTDGLNLAAKRALEDEAVEEEVK
RVKRDEEMADAVPPAAEKDSALPPPAPAPTFDSAPALGGDLPNRSVIAEGKVETETLEKA
AAGEAEPKQEEPEVQDDYEEEEPPNYDELALKEEDGGRPADLYLDTINRAALDFDFERLC
SVTLSHNHIYACLVCGKYFQGRGKSTPAYAHALNEDHHVYINLDTRKVYVLPDGYEVDDA
SLADIKYLLYPTFTPQMLEKIDHQTQPELDLARKEYYPGFVGLNNMKHNSYMNAVLQLLL
HVPPLRDYLILQLDPSSTSSRPTSELTTRLGLLARKLWNPHAFKSQVSPHEFLQEVANAS
GGKFKITEQGDPLEFLKWLLNQVHRDLGGGRKPRSSIVYSAFQGEVRVDDQQIIKTGEFG
TKPKFDIDREIKSTKTPFLFLALDLPPPPLFQDAVETNIIPQVPISAVLSKYDGSTTRED
TQAGVLKRSKITRLPPFLIVYYKRFLSNRFLEEKNPTIVNFPLKGVDMSEYVDSAETLAA
HYDLTANLSLQSSTSTGTTATSPSAEWKVHVHLRNAEKGKEDEGEKWFEVQDLNVREIEK
GMVPLAETYIQIWERRTPNGKWDDLVKVDPPKSHKAKAGGAPQANGKKAEKPAPAAK