Protein Info for mRNA_6000 in Rhodosporidium toruloides IFO0880

Name: 14368
Annotation: KOG2517 Ribulose kinase and related carbohydrate kinases

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 PF00370: FGGY_N" amino acids 7 to 193 (187 residues), 61 bits, see alignment E=1.3e-20 TIGR01315: FGGY-family pentulose kinase" amino acids 7 to 591 (585 residues), 650.6 bits, see alignment E=1e-199 PF02782: FGGY_C" amino acids 309 to 519 (211 residues), 158.7 bits, see alignment E=1.6e-50

Best Hits

KEGG orthology group: None (inferred from 61% identity to uma:UM01859.1)

Predicted SEED Role

"D-ribulokinase (EC 2.7.1.47)" in subsystem Ribitol, Xylitol, Arabitol, Mannitol and Sorbitol utilization (EC 2.7.1.47)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

No predicted isozymes

Use Curated BLAST to search for 2.7.1.47

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (600 amino acids)

>mRNA_6000 KOG2517 Ribulose kinase and related carbohydrate kinases (Rhodosporidium toruloides IFO0880)
MAASTSYYIGVDVGTGSARAALVSAEGDIVAESTYNTTTWRDDRDKDIFEQSSTQIWNCI
SSACKDVLRDSKVDPAHVRGIGFDATCSLVAAKLDSGEPVPVTPGSWSSEQAAKEAEVRD
IILWADHRASKEAKLINSTQSPWLKCVGNTISLEMEIPKMLWLKNHMPPSLFTSCMFFDL
PDWLTYRATGDLARSNCSLGCKCSYVPPGVEGSEGWNREFFQQIGLEEFVKNDFVQVGGL
PGKNGLILTAGQPVGRGLSKKAAEELGLKEGTAVGSAVIDAYAGWIGTVAAPMEGQQTTT
LDDAAHRLAAIAGTSTCHIVQSEEAVFVKGVWGPYKHAVFPGYWMNEGGQSSTGQLLDFM
IDTHPASDKLKQLAKEKDTNHFSLLTEILEQMVKEKGVPFMSYLTRDMYLYPDLHGNRSP
LADVDMRGMLIGMQLDKTIGDLALRYYATGEAIALQTKHIIDEMNKSGHKVESIFMSGGL
VKNRFLMTLIADICNMPVQLPYSSSASVVLGSAMLGAAAAEEADRLGKTLDSQAEAEKSS
YGMKDRLWDIMIRMTRPGSTIAPQASDKELKLLQAKYSIFLECVTLQRKWRKEVRDALGE