Protein Info for mRNA_6010 in Rhodosporidium toruloides IFO0880

Name: 14378
Annotation: HMMPfam-Major Facilitator Superfamily-PF07690,ProSiteProfiles-Prokaryotic membrane lipoprotein lipid attachment site profile.-PS51257,SUPERFAMILY--SSF103473

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 512 signal peptide" amino acids 1 to 28 (28 residues), see Phobius details transmembrane" amino acids 46 to 63 (18 residues), see Phobius details amino acids 75 to 94 (20 residues), see Phobius details amino acids 106 to 130 (25 residues), see Phobius details amino acids 142 to 166 (25 residues), see Phobius details amino acids 204 to 223 (20 residues), see Phobius details amino acids 305 to 326 (22 residues), see Phobius details amino acids 346 to 365 (20 residues), see Phobius details amino acids 385 to 404 (20 residues), see Phobius details amino acids 410 to 433 (24 residues), see Phobius details amino acids 445 to 467 (23 residues), see Phobius details amino acids 482 to 501 (20 residues), see Phobius details PF07690: MFS_1" amino acids 18 to 428 (411 residues), 41.9 bits, see alignment E=6.6e-15

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (512 amino acids)

>mRNA_6010 HMMPfam-Major Facilitator Superfamily-PF07690,ProSiteProfiles-Prokaryotic membrane lipoprotein lipid attachment site profile.-PS51257,SUPERFAMILY--SSF103473 (Rhodosporidium toruloides IFO0880)
MGAHARYVVLAAATVASLSCGLNYSFSAYAPQLAARLALTSTQTNAVGAAGNMGVYLSSP
FIGRMVDCRGPKPTLVFAAFALTAGYLIIRAFYLSGTTEEGLFERFGLPGLVAAELLTGM
GSTAGLSSAGNSVAKSFRKRRAAALSVVLSGFGLSAFFYSTLSSLFLHPRHRSSSSHLSS
PSFAPLSMLALKKRAPESDLTSDFLLLLALGSLVSMLVGLAFVRPVLREADAAKDCSTTG
GEEEDEVDAESVAAEIDTERPDSSPSALASTERTPLLRSQSSKSTSSVVPDRNITGLALL
RELDFYLIFLFNGLCAGVGLCYINNLGTVVRALPSSSSSPAPNPALLQSRLVSLLSIFNC
LGRLLSGFGSDYLLHHRLLPLPRVFWLPLTASLLLSSQLAALAVSSPRALWIPTALTGLA
HGCLFGLSGIIGLERFGIKSWSQTNGVLALAPAIFGQSTNLLFGTIYDSRANLVGKARYT
PAFWMTSGMALCAVGVGAWLAGGRSEMRRRAG