Protein Info for mRNA_6015 in Rhodosporidium toruloides IFO0880

Name: 14383
Annotation: K12619 XRN2, RAT1 5'-3' exoribonuclease 2

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1073 PF03159: XRN_N" amino acids 1 to 259 (259 residues), 339.6 bits, see alignment E=1e-105 PF17846: XRN_M" amino acids 333 to 440 (108 residues), 132.6 bits, see alignment E=2.1e-42 amino acids 677 to 954 (278 residues), 355.1 bits, see alignment E=6.3e-110

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1073 amino acids)

>mRNA_6015 K12619 XRN2, RAT1 5'-3' exoribonuclease 2 (Rhodosporidium toruloides IFO0880)
MGVPALFRWLSKKYPKLVTSVIEEQPVQVPGPDGEVELLPVDSSGPNPNGEEFDNLYLDM
NGIVHPCTHPEGKPAPKTEEDMMREVFIYTDRVVSMVRPRKLLMMAIDGVAPRAKMNQQR
SRRFRSAQEAKQKEEDRQNAIKELEAMGKEVSDEYRNEKGWDSNAITPGTPFMDLLAKSL
RYWVRKKINEDPGWAGLEVIISDASVPGEGEHKIMDFIRRQRVSPDHDPNTKHVIYGLDA
DLIMLSLATHEPHFKVLREDVFADEKKKGRGCHRCGQPGHHSSQCTGEVKKPEADLTPKG
APGSLKPFIFLDVATLREYLAVELSAPIHTFPFNLERAIDDWVFLIFFVGNDFLPHLPSL
EIREGAIDTLIGIWKNSLERMGGYLTNHGKVELKRVQIIFEQLAMREDEIFRKRREAEER
QDRAEKRRKIEREQRDQHRHGGGGGGNHMRFPEPTAAPAQDYVEVNANGTVAVTASGPAG
LPAKPQWAADAAAKSEEKEADKGKEAASLVGSNKSIVANRMAIRMANLSAADMLKAELAA
GSSSTDGKADAPAAKEDDAEVKKEKEAEEAGKAEAERNSAAAAKLKAEMLASSEDQMVDE
ATSPRGTKRAAPPDDGIGSQDPDDALDPEVDEDDDEDADGVNAFLESSLLPPKPAMVAGL
GIAEPPPLKMIGNNVVEQDDTVKLWEPGYKERYYRSKFGVELSDVEFRKKIVKCYVEGLC
WVLHYYYQGTPSWQWYYPYHFSPFASDFVDIDQLEIDFELGAPFRPYEQLMGVFPAASRI
HLPEPFQPLMTESDSPIIDFYPEEFHIDMNGKKMLWQGVALLPFIDEKRLLDAMAGKYPH
LSDFEIQRNERGKDVILVGNKHPLYDYIEGLYGKKKAKEPVPLVTKRSKGIAGAVLPDDT
VPGTTFDSPLPSMPDIVNDESISAYFFFPPQTQPHRSVLLPGAKLERSNLTPYDKDQVRR
GAGERTESNGFHAMRQRDQGGPGFAKVDRGGRGTPQGRGGYQGGTNSPYASGGGGGGGYA
SGYNTPGGYSSGAQTPQGAYAGYGYGQGGGGGAYGGYGGCEILPSRSLAKLPG