Protein Info for mRNA_6016 in Rhodosporidium toruloides IFO0880

Name: 14384
Annotation: Hypothetical Protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 408 transmembrane" amino acids 13 to 30 (18 residues), see Phobius details amino acids 41 to 59 (19 residues), see Phobius details amino acids 273 to 293 (21 residues), see Phobius details

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (408 amino acids)

>mRNA_6016 Hypothetical Protein (Rhodosporidium toruloides IFO0880)
MTSTALSPDPLRYLPLVGWMTANLLDFDYASMQAKFTITPRPAACVLIAIEIWLYYWLIQ
RAWGLFLRIPHVRPVVAEAEVSVRICINVALRCRPTAGTWAVKTWIGSCVSHTRGRLAAC
NVSRPARETSHLRFILDMRILRLICVFLRFDRDSQNASISFDQAQGAAEACIGSAGEHAL
RNLAQFLEPYVPAWTALAECPANEVRATHVILCEVLSTMPSFEDQLANAYLTNDFASVTV
TRVVIAAQNLVEQRWRILNFPVRILGCSFGHRGVVYTLVLLSVLLRVSCWVVNPRLVKHL
FWELVIHILLKEIERVKWDMRSFDCPSQALLFEMIAKMLTAQQHPTYDFGLVLVPYLQAR
VAEDAALKREPELHRAILDTLLVRNELKQRLRGSRDDKREAGSLRRSD