Protein Info for mRNA_6023 in Rhodosporidium toruloides IFO0880

Name: 14391
Annotation: K03293 TC.AAT amino acid transporter, AAT family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 552 transmembrane" amino acids 57 to 75 (19 residues), see Phobius details amino acids 86 to 107 (22 residues), see Phobius details amino acids 164 to 185 (22 residues), see Phobius details amino acids 191 to 212 (22 residues), see Phobius details amino acids 279 to 299 (21 residues), see Phobius details amino acids 333 to 355 (23 residues), see Phobius details amino acids 375 to 397 (23 residues), see Phobius details amino acids 409 to 429 (21 residues), see Phobius details amino acids 449 to 470 (22 residues), see Phobius details amino acids 482 to 502 (21 residues), see Phobius details PF00324: AA_permease" amino acids 57 to 499 (443 residues), 358.2 bits, see alignment E=6.4e-111 PF13520: AA_permease_2" amino acids 59 to 469 (411 residues), 106.3 bits, see alignment E=1.8e-34

Best Hits

Swiss-Prot: 30% identical to AGP1_SACU7: General amino acid permease AGP1 (AGP1) from Saccharomyces uvarum (strain ATCC 76518 / CBS 7001 / CLIB 283 / NBRC 10550 / MCYC 623 / NCYC 2669 / NRRL Y-11845)

KEGG orthology group: K03293, amino acid transporter, AAT family (inferred from 58% identity to bfu:BC1G_10380)

Predicted SEED Role

"Lysine-specific permease" in subsystem YeiH

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (552 amino acids)

>mRNA_6023 K03293 TC.AAT amino acid transporter, AAT family (Rhodosporidium toruloides IFO0880)
MATLPDLEKAQSPPLSTKDDVEKALPTEQEDKPAKNPRGGDAVAPEHLRRNLSARQVSMI
AIVLVLAQGLFLGTGRALHTGGPGSLLINYSMVGALVYLVMLCLGEIATEYPQAGSFTTY
SGRFVDHAFSFTIGWNYAFNDAISCAGDLTAAQVLMEYWTDRLTWLPSLFFLFFLLGINL
MPVHFYGELEYWLSILKVLSVVIFFFLGIAVNAGGNTEHKYIGGQYWTHGAAPFVDGFGG
FAKLFVSAAFAYGGTESLGVTAGETKNPIRNIPRVTRSVFWRILIFYISTVIIIGFNVPY
DYPNLSTKSTATSPFTLVFQQAGSKAGGSFMNAVILTSVLSAGNHAMFAGARVLYGLAVI
RQAPSIFRRTNAQGVPWVSVLAISSVSLLFFGASFLPGGAGQIWTWAQNLVGVSNQLAWL
CIGVASFRFRLAWKKQGRTAEQLRYPNPLGVYGGLVIIVATTFIILVQGWTVFRGTFSGV
DFVANYIELPIFAGLYLFWRLLKGVRMPSLSQIDLDSGRYIQTEEDEVDDLVRAEREKGR
MGWAWRMYGWVA