Protein Info for mRNA_6029 in Rhodosporidium toruloides IFO0880

Name: 14397
Annotation: K01056 PTH1, pth, spoVC peptidyl-tRNA hydrolase, PTH1 family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 274 signal peptide" amino acids 1 to 27 (27 residues), see Phobius details PF01195: Pept_tRNA_hydro" amino acids 170 to 251 (82 residues), 69 bits, see alignment E=2.6e-23

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (274 amino acids)

>mRNA_6029 K01056 PTH1, pth, spoVC peptidyl-tRNA hydrolase, PTH1 family (Rhodosporidium toruloides IFO0880)
MAPKRMPRHMAPRRLAIVGLGNYTHPLTRHSIGQILLQNLAKRAAADPLFKSGSSTLKSA
RHGMRHAWVAEMVLNPRPDSEDNKPLELRFIVPKSPMNLTGRTALGFFWQWLPTIARSQP
KPGSAEALALAEKGEQWWDAVEEGKEVNIAAEERRLAKEESEQPKRVKSMYRLLTLQDNL
DLPPSRYHYQRGGGSKGHKGLRNVIEKYQTERFHRIWVGIGRPERREDVADWVLGPLTRD
EVEACEYDEETKHEGEVLAKAYKEMMRIGYDEPA