Protein Info for mRNA_6085 in Rhodosporidium toruloides IFO0880

Name: 14453
Annotation: HMMPfam-Heparinase II/III-like protein-PF07940,SUPERFAMILY--SSF48230

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 810 transmembrane" amino acids 54 to 76 (23 residues), see Phobius details PF07940: Hepar_II_III" amino acids 538 to 727 (190 residues), 38.9 bits, see alignment E=4e-14

Best Hits

KEGG orthology group: None (inferred from 50% identity to cnb:CNBC3840)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (810 amino acids)

>mRNA_6085 HMMPfam-Heparinase II/III-like protein-PF07940,SUPERFAMILY--SSF48230 (Rhodosporidium toruloides IFO0880)
MYHQRQDSVGSAIPLHNYSYQQAPGGNEQGYGSAYGEKQYPQGKPVGSSRRKWPWILGAL
ILIAVILGAVLGGVFGSRAANDNKKSDAASGADNKGASGSGVANAATRTKGSGGFAIVPT
ATDQFGNPMYPTSTGSAHISAPTVVSNSSLSCQADSTSGVSLDSPKKTHPLLIATENKWN
CLPSLIAQDSYMSYWNDTIFLNASKFYDMPPTNYSIDGGLTGSGVLDVAREVQLRIKHWA
YAYRLSNDTKWVDRTWRELVVASGNDTNTYFGQDNKGGDVWNSGHFLDLAEFTEAFALAY
DWMYDAWSQEQRTAIVWSIVNLGLRYGVNAFADPSGAGASYSWWTKVDGNWNCVCNKGMT
MGALAIINEDPTNGIAKQILGYTVPNAVEYCSFAPSPEGTWSETANYWYFGTYSHVEMAA
ALLSATGSTQNMLDANPGMKLSATYHMYVTGMQGLFNYGDCGPNKYTATANGLMFYGNQY
NMPVYTLFQRDRGDAPEPMSMLYYDPQVSGQFWDNLPLDHHFSNTTDGWFSARSSWTDND
GIYIAMKAGKLTGHQTHGDLDAGDFVLDAMGQRWAGELGSGDYLSNGYFSSEDQNSPRWL
YYRKRTEGQNTLMIGDADQNVAGTPQTTFQSTGEAQDALDYTPANSSTAFFTADLSEMYN
STTSVKRAIRFINGRHQVLLRDEVDSSAAVQWRMNTNATVALSDNNQQATLTLGGQTLIM
QLRSPSGAQFGTAQPERQSSDPTTTNYGGSSVTMSPDQPNPGVTVVTVDVAAGNNVIEVL
FNPQWKSFKSSDYLTPPSVAIDSWSLTSHN