Protein Info for mRNA_6088 in Rhodosporidium toruloides IFO0880

Name: 14456
Annotation: KOG1294 Apurinic/apyrimidinic endonuclease and related enzymes

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 503 TIGR00633: exodeoxyribonuclease III (xth)" amino acids 1 to 310 (310 residues), 124.9 bits, see alignment E=2e-40 PF03372: Exo_endo_phos" amino acids 26 to 303 (278 residues), 41.5 bits, see alignment E=5.7e-15

Best Hits

Predicted SEED Role

"Exodeoxyribonuclease III (EC 3.1.11.2)" in subsystem DNA repair, bacterial (EC 3.1.11.2)

Isozymes

Compare fitness of predicted isozymes for: 3.1.11.2

Use Curated BLAST to search for 3.1.11.2

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (503 amino acids)

>mRNA_6088 KOG1294 Apurinic/apyrimidinic endonuclease and related enzymes (Rhodosporidium toruloides IFO0880)
MRIVTYNVADLREWEKLDKWGMDQTMAQRLKRLGGDIVCLQETHVQQKAVPRSTACPPGW
HSFWSFCPQKVKGSSIHGSAVFVKEDVVVPVKVEEGLTEAKALSSLQKADSTATTADLIG
GYAQNLQLRGDPNSFESEGRTIVLEFGNIILFACYAPFEGISTDPQKQKKLAKKLDYFDI
LEARIRNARAAGKEVIVLGDLNAHASTEDSHNAAFHAKQEGVPFMSHPPRRWLQTLVGPN
GLLIDSTRHFHPGSKMFSRWGDKVTTRKLHTKGARVDYILTSPVLQPWLKDGGIQHHVLG
SDHAPVFLDLHDQIEIDGVKVKLWDVLNPGRRKTDPPPPPPALSAMHWTHFAPEVNGRGT
SNGFFAAFRPITASTSRKPSYSTAILTVNASGSSSSAQSGKKSSSVASSSSTSTSLARSS
SSSRKTSTSSPAVKGKKRPSSNEMLDLTVDTDDEEVQVASGSSAPPVKRKSDGGVVSQAK
NLKSGSSALSQAGEKKKKRNKTA