Protein Info for mRNA_6092 in Rhodosporidium toruloides IFO0880

Name: 14460
Annotation: K06639 CDC14 cell division cycle 14

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 823 transmembrane" amino acids 189 to 204 (16 residues), see Phobius details PF14671: DSPn" amino acids 125 to 244 (120 residues), 115.5 bits, see alignment E=2.8e-37 PF00782: DSPc" amino acids 317 to 428 (112 residues), 57.8 bits, see alignment E=1.1e-19

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (823 amino acids)

>mRNA_6092 K06639 CDC14 cell division cycle 14 (Rhodosporidium toruloides IFO0880)
MATGAAAPAARSLSPSDSLASSSSNTDADGDSIINDAAGATGTSTATSSELLEYVLGAAR
AGGGGGHPAASSSSARLRGAKGTPLPAGPVLTFGPRLGYTYFAQPAPRAEALNALTPGKE
GEGGEEGIYWFSVDDQLLYLSFFQDYGPLNVGCLYRFCLHLHSLLSSPDHAHQRIFLYSS
DEPDKKVNAAVLMALYAMVVMRWSVADVLHPLSSLELQPYRDAGYSRADYHLHPQSLLYG
THRALSHSLLDLSTFDLAAYEHAEKVETGDWNWITPGFVAFASPVESGYREGAVTGAGGA
QGGSGKLSRAFRNVLDEFEKKGVKVVVRLNKKLYDASHFTSRGIDHVEMYFDDGTNPTLD
MCRRFIDLSDRIISAGGAVAVHCKAGLGRTGTLIGAYLIYKHGFTADEAIGFMRLMRPGS
CVGPQQHFLYENQFEWVRWAAQDELRRELESQRGLVGKELAAAGGAVASTSAAAGEAVGR
PLTPPNEADLDRARSKTPSASHGAPVTPRRQTGNVPGQPRKTPGRSRHAVAEPERVSPEE
KSALEEEERMEGVVLSSPRKGRASGGGAGSKGKGKGPMLDAAEEEDEDDDPLAMVVVPSS
QRKLGLAPPARMNGSATASTSSARPPPPAPPKTPTQPQSTRPTRIARPATRPLSALADNR
IVDRIGTTRSSTRIGGGGATTASAGGAAGMARSKAAKNLNTVFEATTGGAGAGAAGQTRY
PLRNGRTTSTGSASSSTSAGLQPPNSPSKLPQSQRVLGKRDTGGPGRGNGAAANGSSAAA
ANGGFNPAAAAAASAAGRNGAGLGRNVRRRRSSMGSQETVNAG