Protein Info for mRNA_6093 in Rhodosporidium toruloides IFO0880

Name: 14461
Annotation: HMMPfam-Permease for cytosine/purines, uracil, thiamine, allantoin-PF02133,PIRSF--PIRSF002744

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 540 transmembrane" amino acids 94 to 119 (26 residues), see Phobius details amino acids 125 to 146 (22 residues), see Phobius details amino acids 166 to 188 (23 residues), see Phobius details amino acids 198 to 222 (25 residues), see Phobius details amino acids 229 to 250 (22 residues), see Phobius details amino acids 266 to 289 (24 residues), see Phobius details amino acids 301 to 328 (28 residues), see Phobius details amino acids 349 to 374 (26 residues), see Phobius details amino acids 394 to 414 (21 residues), see Phobius details amino acids 425 to 447 (23 residues), see Phobius details amino acids 472 to 490 (19 residues), see Phobius details amino acids 514 to 533 (20 residues), see Phobius details PF02133: Transp_cyt_pur" amino acids 93 to 450 (358 residues), 47.7 bits, see alignment E=5.4e-17

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (540 amino acids)

>mRNA_6093 HMMPfam-Permease for cytosine/purines, uracil, thiamine, allantoin-PF02133,PIRSF--PIRSF002744 (Rhodosporidium toruloides IFO0880)
MAPTTLSIEPKPVPTRSPSEVSSDADVDDEKLSTSTPSAVNGTTTDVEAADGTGRLARLT
AYLAGIGIETRSLERVQEDQREQLPLWRLAMRQIFFWFSVNLSFSALGTGMLGGLYFTLD
FRTSMVIIWLGTALGVCVSATMALVGPKTGLRTMAASRFAGGWPGTAIFSLLNALTQLCY
AVTTALSGAQALRAINHSLSLIVGIVILTVIVMVLAVWGYQFLHIWERWAWIACFIIYCI
VLGLGARGGYDVSSRTSSMDTGRALIGDVLSFTGIMFSVGASWCSIAADYNMTLPATTPK
WIIWGSAFIGMWIPTAFACSVSATFMTLTKESYVTALEEESLGGVVGEILIQGAGGFGKF
LLVLLAFSTISANIPNSYSGALCIQSLHPVLMKIPRVFFVVAFTLIYMVVAIVGREHFSE
ILSNFSAILAYYTAFLSAIVFLEIFYFRSSRGPLGASTNWDDVTDYSKLPPGYACVASIC
VTIPPVVMSMAETWYTGPIAKKVTEPASPYGGDLGFEMSAVVATVSYFIFRWIEIKVFKR