Protein Info for mRNA_6094 in Rhodosporidium toruloides IFO0880

Name: 14462
Annotation: K16738 NDE1, NUDE nuclear distribution protein NudE

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 625 signal peptide" amino acids 1 to 16 (16 residues), see Phobius details PF08614: ATG16" amino acids 34 to 187 (154 residues), 39.2 bits, see alignment E=9.1e-14 PF04880: NUDE_C" amino acids 133 to 320 (188 residues), 44.4 bits, see alignment E=2.7e-15

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (625 amino acids)

>mRNA_6094 K16738 NDE1, NUDE nuclear distribution protein NudE (Rhodosporidium toruloides IFO0880)
MVRFLLLVRLPSTRSSRLYVSLNAFNDTLDSHDILDSLAFTLLRSTTLPTATSSSSPCSP
PSLFSPSLPQPQPDSRAQSKYLSALSSHSSTITHMQKELESLRSTERGLRDRLREVEVDN
DDLEGRERATSSSLADLEARYNKSLERIALLEEELVGKARLEEECQRARDELRDLNEELA
ITKSQLDSATARLSSQTDSNATPTKPPPRRRTPSPPASPQTPTIEFVQPTPIPSRTTPTA
SNASPSKLPRPLSFSSSSSGSLPALAPAPLSRSTRLSHLPSLSSSSPSTSTASPSKLPQP
ARLSRSDTASMIRALSNSTKSGRNGRGEGESEFGEFSSCGGRRSGRGRGDDAEFDDAPSH
DYLQRHDELATIKSARLPPTNAIDSPSFTLRSSRLDWVFDSSSESVERLFNFDVDERDES
SCVAYPWHQRGKAQFAPRTWTQRRSRRESACYRLGAGELRPRKRSDARSKAVKYLFVRLL
DVRPVDSLGGPSASLDHRTRARAAVKRIRTITRPSRGATSEWRVWAAGTEGVPCERQERQ
GGGTACSEKRVSWVEEKVRQRREGCPSSAHSSPVDFRPPFFRSAFERDHPAYPLNPTLLA
MRYAALNLGGRWCSACSSSRVVGTR