Protein Info for mRNA_6109 in Rhodosporidium toruloides IFO0880

Name: 14477
Annotation: KOG1477 SPRY domain-containing proteins

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 664 PF00622: SPRY" amino acids 192 to 265 (74 residues), 39.8 bits, see alignment E=4.7e-14 amino acids 297 to 336 (40 residues), 23 bits, see alignment 7.5e-09 PF10607: CLTH" amino acids 459 to 637 (179 residues), 41.9 bits, see alignment E=9.8e-15

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (664 amino acids)

>mRNA_6109 KOG1477 SPRY domain-containing proteins (Rhodosporidium toruloides IFO0880)
MSTLRDYFPAATAHRQSPQQPAHSVSGPNLLPVSPRRSHSSLPSIGSSTRDRISNAPSFP
VPRYLRHASLYEGRFETVPRLLVDEGVPAFDEMSASLSGKGKGRASLSLALGVGDSMAST
SASTNARSSGADNSSSVPPILLPTCWDADDRCSLLEITSDRMGVSFAGSAKYGDRDAAAI
RANRPVPPQAGIYYYEVTILDKGVSGYIGIGLSHRTVSLSRLPGWEDKSYGYHADDGRAF
CSQGTGEPFGPTFTTGDVIGCGVDWTGAGPPVTDKERSGLRGAAAKEAAAKGGGGRAFFT
KNGEFIGYAFCNLQGKLYPTVGLRTPNEAIRVNFGNEPFRFDIEGLVLERKRTILSRLAS
TPLASTSFLPSPAPPIPALLPPTPQDRLHETLQAVISAYLVHHGYAETARSFTEQISEER
LERAQGLLPSSAPAAKPPTSASTDSDDLVASIAASSVLRSEIRQAALSGTGAERALALVQ
EHYPTAFADEADSRDEDGGVLFKMRCRVFVEKVVEWSRANRDPAAMESEDANDVSMDVEA
GAAETITLDSLLALGQSLHAQYSADPRPVARAELQAVLGLMAYRDPENEATGRTRELVGK
AEREKVADELNRAVLRAANLPPVPALEALYRHASASIQLAGDVGCGSAAMVDVRSEVLGD
LTGA