Protein Info for mRNA_6120 in Rhodosporidium toruloides IFO0880

Name: 14488
Annotation: K05954 FNTB protein farnesyltransferase subunit beta

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 489 transmembrane" amino acids 469 to 486 (18 residues), see Phobius details PF00432: Prenyltrans" amino acids 109 to 141 (33 residues), 39.1 bits, see alignment (E = 2.5e-14) amino acids 151 to 192 (42 residues), 33.9 bits, see alignment 1e-12 amino acids 205 to 252 (48 residues), 17 bits, see alignment 2e-07 amino acids 276 to 315 (40 residues), 25.2 bits, see alignment 5.3e-10 amino acids 338 to 374 (37 residues), 21.4 bits, see alignment 8.6e-09

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (489 amino acids)

>mRNA_6120 K05954 FNTB protein farnesyltransferase subunit beta (Rhodosporidium toruloides IFO0880)
MLADSVLTMPWIPTPTDGIAGSETLAAQHEAEQSISSLLTEHLAASADPQLQRDVHTAYL
TRLLKAPLPKYFTGLDASRPWILYWAIHSLALLDGELDATAKTRLVDTLKRCQNPDGGFG
GGPGQISHLAPTYAAVCALAHAGPEGWRAVDRHGMYRFLLSLKQSDGSFIMHEGGEVDVR
GCYCALTAAVLLNILTPDLASGTASFIASCQTYEGGLAAAAHPFSHDPSHPAPLGEAHGG
YAFCAAASWSMLRVFSDPTSPCFAEAPLDLARAELDVRALMRWSASLQAMPIEGGGFRGR
TNKLVDGCYSWWCGGLFPIVDSLIAETDDEPQPERELFDRKSLQEYVTLVAQAPSGGLRD
KPGKPADAYHTCYNFSGDSTAQTKLRFSSSRQRQLADSFSSPFGGTIVTEGNQQDVDEEV
VVIRGANESDEAAELRMREIYSRTLAWVAEDPKIIVGDPQNELLPTHPLFNITLPLVQSM
MAFFYSQRS