Protein Info for mRNA_6130 in Rhodosporidium toruloides IFO0880

Name: 14498
Annotation: K11786 STH1_SNF2 ATP-dependent helicase STH1/SNF2

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1329 PF08880: QLQ" amino acids 100 to 133 (34 residues), 46.7 bits, see alignment (E = 7.7e-16) PF07529: HSA" amino acids 339 to 409 (71 residues), 60.1 bits, see alignment 7.6e-20 PF04851: ResIII" amino acids 520 to 680 (161 residues), 42.4 bits, see alignment E=2.8e-14 PF00176: SNF2_N" amino acids 532 to 819 (288 residues), 238.5 bits, see alignment E=3.3e-74 PF00271: Helicase_C" amino acids 843 to 956 (114 residues), 60.7 bits, see alignment E=6e-20 PF14619: SnAC" amino acids 1053 to 1121 (69 residues), 39.3 bits, see alignment 2.8e-13 PF00439: Bromodomain" amino acids 1223 to 1298 (76 residues), 78.3 bits, see alignment 1.4e-25

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1329 amino acids)

>mRNA_6130 K11786 STH1_SNF2 ATP-dependent helicase STH1/SNF2 (Rhodosporidium toruloides IFO0880)
MAAVQPAGKQGPSLSPDKLRQVIARIQQLKGEGLTVETSTELANLTKIILALSQRQRAQS
NGVSANGTTTPSASTPAADAPASSATTDGPIPPVSPSTVPFTPEQVAALRCQVVAFRLLA
RNQPIPPALQAALAQPSKALEYADKLEDGADKMTGDELNPESLAAEREKALAAEPPVEEV
EDPDSLVYPYNAFLTPQEILRSFHGVSGRRTLLIPNLLPAGLDPQSIIDERNRFIAARVQ
QRRAELEQLPSNLSQSDLSQLGLASDNGESLASQKIRALIELKSLNLLERQRALREQVVQ
GIKPACSLALPLDRSLFRRARKPTLRDATAIEGIERRQKQERERRAKQKHLDHLAEITEH
GRNLVAAHRGHDGKFQKLGKALLKFHVDAEREEQKRVEKVSKERLKALRADDEEGYLKLI
DTAKDTRITHLLRQTDSFLDSLAAAVSAQQSEARAEVEDAGGDAVPQQTGGEDERVDESR
FGASAVFQDDVAKEKVDYYNVAHRVKETITKQPSILIGGELKPYQIKGLEWMVSLYNNHV
NGILADEMGLGKTIQTLSLITYLIETKKQPGPYLVIVPLSTMPNWISEFEKWAPSVKVVS
YKGTPAQRKQAQHEIRTGNFQVLLTTYEYIIKDRPLLAKTKWLHMIIDEGHRMKNTQSKL
SLTLTQYYSSRYRLILTGTPLQNNLPELWALLNFVLPKIFGSVKSFDEWFNAPFANTGGQ
DKIELNEEESLLVIRRLHKVLRPFLLRRLKKDVESDLPDKVERVIKCKMSSLQLKLTKQI
KEHGMIFTEGPGENKKQSGIRGLQNQIMQLRKICNHPFVFEGVERTINPTGLNDATLYRV
AGKFELLDRILPKLFATGHRVLMFFQMTTVMTVFEDYLNFRRIEHLRLDGMTKHEDRATL
LKLFNDPNSKYPIFILSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKE
VRILRLVTERSVEEHVMAGAARKIEMDKKIIQAGRYDNKSTAEERDAFLRALLEADDGEP
EEDDDADEADMLNEAIARTEEERAIFAQMDRDRRAAEEAAWAAAGNTGKLPERLIQEWEL
PEVYRMDHPKAVVESDVRPDGSRRNRTQVTYDDGMSEEQWLQALEDEDDDSSKKRGKRRA
AQGTPKYSFGEDGGASESDGDEPRNRLKRGRVSGTGTPSVNGDEGGSRAGGGKRRKVLSP
YQEKLRQCFEELLTEVENLDNPTMGHQCAGLFNELPPKRDYPDYYLIITQPISLKEIKKK
VNNGTYPDTDAFARDIHLMLNNAMTYNEEGSIVYEDARLLRETFNAVYAKLTFNGQPLDP
LPMLERPTA